Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1885
         (634 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   3.7  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            22   3.7  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   3.7  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   8.6  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   8.6  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 254 CCARSCSSCK 283
           CC R+CSS K
Sbjct: 191 CCLRTCSSAK 200


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 160 WLCSTGGSPRPSPYPL 113
           WL +  G+P P+  P+
Sbjct: 37  WLAAASGAPHPAALPI 52


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 160 WLCSTGGSPRPSPYPL 113
           WL +  G+P P+  P+
Sbjct: 37  WLAAASGAPHPAALPI 52


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 433 CEERHDNWP*HR*YQRSCLN 374
           C E H +W  H      CLN
Sbjct: 312 CRENHASWVNHLSNIEDCLN 331


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 491 SDTRGSTLLGSILCKV*LS 435
           SD  G+T L S+ C V L+
Sbjct: 61  SDNNGATRLASVRCPVGLA 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,545
Number of Sequences: 336
Number of extensions: 2835
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)