Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1885
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.5  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   5.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 489  AHDGRESAGLYLRNGRWSRQTNQGDQRG 572
            AH    S  +  +NGR+SR  +QG   G
Sbjct: 1771 AHSRSGSQSMPRQNGRYSRVPSQGGGSG 1798


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 532 VGGLDKQIKEIKEVIELPVKHPELFD 609
           VGG    I +I  +I+LP   P + D
Sbjct: 10  VGGFCHSIIQIPVIIQLPFCGPNVID 35


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 145 GGSPRPSPYP 116
           GGSP+ +PYP
Sbjct: 104 GGSPKLTPYP 113


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 317 LWIKRRSS*KFILKVNSSSI*--TRTLILTMSRPIVVSLFATKAILYTKYY 463
           L I+RRS      K+  SSI   TR  I T+   +++   A   I +T YY
Sbjct: 229 LEIRRRSKKSEDDKIRRSSIGFLTRAKIRTLKMTVII--IAVFFICWTPYY 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,501
Number of Sequences: 438
Number of extensions: 3526
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)