Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1884
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   208   4e-55
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   207   6e-55
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   207   6e-55
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.30 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   2.1  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    27   2.1  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   2.8  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   4.9  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   6.5  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.5  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   6.5  

>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  208 bits (508), Expect = 4e-55
 Identities = 95/143 (66%), Positives = 118/143 (82%)
 Frame = -2

Query: 493 EEAKSKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFE 314
           EEAK KLCKVKRV  G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI  FIKF+
Sbjct: 117 EEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFD 176

Query: 313 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYI 134
           +    M+TGGRN+GRVGTIV RE H GSF+I+H+KD+    FATRL+NVF+IG+  K++I
Sbjct: 177 TSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWI 236

Query: 133 SLPRGKGIRLTIAEERDKRIAAK 65
           SLP+GKG++L+I EERD+R A K
Sbjct: 237 SLPKGKGVKLSITEERDRRRALK 259


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  207 bits (506), Expect = 6e-55
 Identities = 95/143 (66%), Positives = 118/143 (82%)
 Frame = -2

Query: 493 EEAKSKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFE 314
           EEAK KLCKVKRV  G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI  FIKF+
Sbjct: 117 EEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFD 176

Query: 313 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYI 134
           +    M+TGGRN+GRVGTIV RE H GSF+I+H+KD+    FATRL+NVF+IG+  K++I
Sbjct: 177 TSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWI 236

Query: 133 SLPRGKGIRLTIAEERDKRIAAK 65
           SLP+GKG++L+I EERD+R A K
Sbjct: 237 SLPKGKGVKLSITEERDRRRALK 259


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  207 bits (506), Expect = 6e-55
 Identities = 95/143 (66%), Positives = 118/143 (82%)
 Frame = -2

Query: 493 EEAKSKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFE 314
           EEAK KLCKVKRV  G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI  FIKF+
Sbjct: 117 EEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFD 176

Query: 313 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYI 134
           +    M+TGGRN+GRVGTIV RE H GSF+I+H+KD+    FATRL+NVF+IG+  K++I
Sbjct: 177 TSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWI 236

Query: 133 SLPRGKGIRLTIAEERDKRIAAK 65
           SLP+GKG++L+I EERD+R A K
Sbjct: 237 SLPKGKGVKLSITEERDRRRALK 259


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1014

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +2

Query: 134  DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 259
            + RLR+L +     Y  V+ P  EG     LD+H+   A ++L GH+
Sbjct: 887  EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 380 QSQRFHPVRHRNYED 336
           ++++ HPVRH  YED
Sbjct: 5   ENEKIHPVRHSKYED 19


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 322 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 218
           KFE   LC + G   L R+G  +  E   GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 413 WPHHPLPRPTYQSQR 369
           WPHH LP   + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 410 PHHPLPRPTYQSQRFHPVRHRNYEDY 333
           PH+  P    + Q+ HPV+  N+  Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 265 GTIVSRERHPGSFDIVHIKDSTGHTFATRLNN 170
           G I  RE+ P  + I H   STG T+    N+
Sbjct: 55  GVISYREKFPMDYHIWHTAPSTGKTYLQPWND 86


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 183 VAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDSNLM 326
           V +  P ES M  + K+   L   T  P RP L+P + +   P S L+
Sbjct: 414 VRERAPEESPMTFLQKKMAALP--TSSPVRPMLKPTLQLQNSPLSKLV 459


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 407 HHPLPRPTYQSQRFHPVR 354
           H PLPRP  Q +   PVR
Sbjct: 720 HKPLPRPPVQVETREPVR 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,294
Number of Sequences: 5004
Number of extensions: 42575
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)