Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1884
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    25   0.45 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.78 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   0.78 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    24   1.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   3.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.6  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   9.6  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   9.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.6  

>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 246 RDIPAPSTLCTSRTPRDTPSP 184
           RD+P  ST  T+   RDT +P
Sbjct: 137 RDLPGKSTTTTAEVKRDTINP 157


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.78
 Identities = 11/44 (25%), Positives = 16/44 (36%)
 Frame = -1

Query: 215  HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 84
            H G  G  + H      H+R G + +     R    P    G+G
Sbjct: 1755 HSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRYSRVPSQGGGSG 1798


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 0.78
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
 Frame = -1

Query: 215 HQGLHGT-HLRHEVEQRVHNRQGHEGVHL---AAARQGHPPHH 99
           H  +H T H  H      H++      H    AA + GH PHH
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHH 465



 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 391 LGSGWCGHHALPSTEHS*VRSPH 459
           +G G    HA P   HS   +PH
Sbjct: 419 MGHGHSHIHATPHHHHSHAATPH 441


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 246 RDIPAPSTLCTSRTPRDTPSP 184
           RD+P  ST  T    RDT +P
Sbjct: 137 RDLPGKSTTTTVEVKRDTINP 157


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 191 LRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRR 57
           ++ E  QR H+ Q H     + A Q H   +++   Q  R Q R+
Sbjct: 133 IKQETLQRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQ 177



 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -1

Query: 188  RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQ 81
            + + +Q+ H  +  EGV    A       + RGA Q
Sbjct: 1226 QQQQQQQQHQAREREGVGAGIAETSAGTSNSRGAAQ 1261


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 212 DVHNVEGAGMSLAGHD 259
           DVH V GAG  +  HD
Sbjct: 110 DVHGVIGAGHWIGDHD 125


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -2

Query: 235 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 122
           G F  VH+   T   F T    +  + +  + YI L R
Sbjct: 271 GDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKR 308


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -2

Query: 235 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 122
           G F  VH+   T   F T    +  + +  + YI L R
Sbjct: 271 GDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKR 308


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 394 PDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 272
           PD L  +     LD+   +I +F      NL  +TG R +G
Sbjct: 447 PDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIG 487


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +3

Query: 252 DTMVPTRPKLRPPVIIHKFPDSNLMKSIIFVVAMSNWM 365
           D+  P +P   PP      PDS  +  I  +    N M
Sbjct: 334 DSDTPPKPAPPPPPPSSSGPDSAKLDKIFDIATKENAM 371


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 136 CTPSCPCRL 162
           C P C CRL
Sbjct: 67  CAPGCVCRL 75


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 136 CTPSCPCRL 162
           C P C CRL
Sbjct: 67  CAPGCVCRL 75


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 237 PAPSTLCTSRTPRDTPSPRG 178
           P+P+  C S T     SP+G
Sbjct: 745 PSPAEQCASTTTITARSPQG 764


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,214
Number of Sequences: 438
Number of extensions: 3567
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)