Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1883
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.70 
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   2.8  
SPAC959.10 |sen15||tRNA-splicing endonuclease subunit Sen15|Schi...    27   3.7  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.9  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    26   6.5  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   6.5  

>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -3

Query: 517 QHSLVSLSHIVSELKLNDKKLLP-LFEWSQLNCSSIKNTSNC*YKDKTHKNKFLCHVLLE 341
           Q    S+    S++  +   LLP L +W ++  S   N  +  +K  +     LCH+LL 
Sbjct: 157 QQLFASVDSSASDISFDAFSLLPHLLKWEEIVWSGFINYLDTEHKRDSLPTAVLCHLLLR 216

Query: 340 MS 335
           +S
Sbjct: 217 LS 218


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -3

Query: 523 SSQHSLVSLSH-IVSEL-KLNDKKLLPLFEWSQL 428
           +   SL+S ++ I+S L K  D+KL+P+ EW QL
Sbjct: 658 NEHESLLSRTNDILSTLRKERDEKLIPIHEWQQL 691


>SPAC959.10 |sen15||tRNA-splicing endonuclease subunit
           Sen15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 143

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 741 FFLLLGITNSDSVLIYFNRT 682
           FFL LGI  SDS ++Y+  T
Sbjct: 112 FFLYLGIMCSDSTIVYYKIT 131


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 358 CHVLLEMSLKPNSLLPPDIK*TQSTSLIIHSCYCNFL 248
           C V    + KP++ LPPDI      S  +++C  N +
Sbjct: 887 CEVKSINAFKPDTTLPPDIISDSRFSSRVYACTANLI 923


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 493 HIVSELKLNDKKLLPLFEWSQLNCSSIKNTSN 398
           HI+  L+ + +K  P+  WS+   S    TSN
Sbjct: 516 HIIELLQKDKRKFEPIIAWSETEFSEFFVTSN 547


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -3

Query: 622 NCSVNYSSTLSPPYPSRWDRHSEFFYSILFYQPSSQHSLVSLSHIVSELKLNDKKL 455
           N ++  +S   PP+P   DR   F  + L  QPS + ++      + E++    KL
Sbjct: 279 NSAILKASFSFPPFPRYSDRMKRFIATCLQEQPSHRPNIYQTLKEIMEMQGTPLKL 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,945
Number of Sequences: 5004
Number of extensions: 52026
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)