Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1883
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0333 + 22096960-22097445,22098508-22098643,22099159-220993...    28   9.0  

>02_04_0333 +
           22096960-22097445,22098508-22098643,22099159-22099325,
           22099447-22099567,22099660-22099760,22099908-22100006,
           22100512-22100622,22100709-22100788,22100880-22100949,
           22101880-22101965,22102097-22102166,22102250-22102338,
           22102448-22102572,22102686-22102766,22102848-22102908,
           22103002-22103060,22103134-22103273,22103391-22103480,
           22103917-22103976,22104072-22104188
          Length = 782

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 574 RWDRHSEFFYSILFYQPSSQHSLVSLSHIVSELKLNDKKL 455
           RW+R S  FY+ LF QP     +  L+ I+  L+  D KL
Sbjct: 666 RWERQSRAFYN-LFRQPD---RVEKLAQIIERLEQGDLKL 701


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,156,324
Number of Sequences: 37544
Number of extensions: 287845
Number of successful extensions: 513
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)