Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1883
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    26   0.43 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    26   0.43 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    26   0.43 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    26   0.43 
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   3.0  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   7.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   7.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.2  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 241 YGTKNYNNNCELLDLLIEFI 300
           Y   NYNNNC+ L   I +I
Sbjct: 100 YNNNNYNNNCKKLYYNINYI 119


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 241 YGTKNYNNNCELLDLLIEFI 300
           Y   NYNNNC+ L   I +I
Sbjct: 100 YNNNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 241 YGTKNYNNNCELLDLLIEFI 300
           Y   NYNNNC+ L   I +I
Sbjct: 100 YNNNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 241 YGTKNYNNNCELLDLLIEFI 300
           Y   NYNNNC+ L   I +I
Sbjct: 100 YNNNNYNNNCKKLYYNINYI 119


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 253 NYNNNCELLDLLIEFI 300
           NYNNNC+ L   I +I
Sbjct: 99  NYNNNCKKLYYNINYI 114


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 250 KNYNNNCELLDLLIEFI*YRGVKGY 324
           KN+NN+ ++   LI+F   +  K Y
Sbjct: 294 KNFNNDDDIKSYLIQFFANKNQKFY 318


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 433 DSIQITEEVFCHLISIH 483
           DSI    E FC +IS+H
Sbjct: 155 DSISQANEGFCAVISMH 171


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 433 DSIQITEEVFCHLISIH 483
           DSI    E FC +IS+H
Sbjct: 150 DSISQANEGFCAVISMH 166


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 253 NYNNNCELL 279
           NYNNNC+ L
Sbjct: 346 NYNNNCKKL 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,176
Number of Sequences: 438
Number of extensions: 3752
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)