Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1881
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040659-5|AAO12389.1|  674|Caenorhabditis elegans Half transpor...    28   8.0  
AF040659-4|AAK39394.1|  815|Caenorhabditis elegans Half transpor...    28   8.0  

>AF040659-5|AAO12389.1|  674|Caenorhabditis elegans Half transporter
           (pgp related)protein 9, isoform b protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -3

Query: 711 TLELFTNDKILHILKTFRIIVF*F---WKVSLLPRVNCTHVFLIHIFF 577
           TL L+ N    ++   F  ++F F   WK+S++  +N   +FL++  F
Sbjct: 317 TLSLYMNVLTRNLTMLFGSLIFMFTLSWKLSMITLINIPIIFLVNKIF 364


>AF040659-4|AAK39394.1|  815|Caenorhabditis elegans Half transporter
           (pgp related)protein 9, isoform a protein.
          Length = 815

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -3

Query: 711 TLELFTNDKILHILKTFRIIVF*F---WKVSLLPRVNCTHVFLIHIFF 577
           TL L+ N    ++   F  ++F F   WK+S++  +N   +FL++  F
Sbjct: 317 TLSLYMNVLTRNLTMLFGSLIFMFTLSWKLSMITLINIPIIFLVNKIF 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,394,210
Number of Sequences: 27780
Number of extensions: 300222
Number of successful extensions: 769
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)