Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1878
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   2.3  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    26   5.2  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    26   6.9  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    26   6.9  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   6.9  

>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 589  LFKRHFAG*QKSHFTFKNWKKYQNKHASLSIL 494
            +F+RH A  ++SH  F    +Y    AS+S+L
Sbjct: 997  VFRRHGAKERESHILFPKSSQYDKDQASVSLL 1028


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 250 STMYKVPASSKVHSDSPLLKAFSNSELLRSSY 155
           S +Y++      HSD P   +FS S+ LRS Y
Sbjct: 156 SPLYQI--DEPYHSDEPYAFSFSRSDTLRSLY 185


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 261 LLGSQQCTKSQPVVKYTLILHY*RHFLIQSCYAHHISTN 145
           L+ + QC+    VV   LI+    HFL + C  H I+++
Sbjct: 740 LIETLQCSLCMDVVAELLIIVPCGHFLCRECLTHVITSS 778


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 225 VVKYTLILHY*RHFLIQSCYAHHISTNLNKIYFLHYFHFTQH 100
           ++K   IL Y R+  ++  +    S NLN + F H+F F  H
Sbjct: 135 LLKNASILAYRRN--LKYIFLTVFSANLNALNFYHHFDFVPH 174


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 423 NYKDKCRVLSEISLKPNSPSPLDMYK 346
           N      V+S  SLKPN+ SPL +++
Sbjct: 189 NASSSSSVVSSPSLKPNNTSPLKLFQ 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,006
Number of Sequences: 5004
Number of extensions: 61831
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)