Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1878
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical p...    50   2e-06
AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical...    44   2e-04
U40421-3|AAA81439.2|  347|Caenorhabditis elegans Hypothetical pr...    42   5e-04
AL032663-6|CAA21766.2|  349|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF025463-4|AAB71010.2|  344|Caenorhabditis elegans Serpentine re...    29   4.9  
Z75546-1|CAA99889.1|  546|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical
           protein C55A6.1 protein.
          Length = 228

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 15/43 (34%), Positives = 28/43 (65%)
 Frame = +3

Query: 144 GWWKYDERSNSELENAFNNGESECTLLLAGTLYIVDFQAMTQF 272
           GWW+++ R+  E+E A+N G+  C +++ G  Y++DF    Q+
Sbjct: 121 GWWRFEPRNEREIEEAYNAGKCHCEVVICGRPYVIDFHQFLQY 163


>AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical
           protein Y105E8A.14 protein.
          Length = 224

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 144 GWWKYDERSNSELENAFNNGESECTLLLAGTLYIVDFQAMTQF 272
           GWW++D R   E+E AF +      + + G  YIVDF  M Q+
Sbjct: 140 GWWRFDPRIEKEIEEAFTHQMPMTEVTICGNPYIVDFSQMCQY 182


>U40421-3|AAA81439.2|  347|Caenorhabditis elegans Hypothetical
           protein C02B8.6 protein.
          Length = 347

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +3

Query: 144 GWWKYDERSNSELENAFNNGESECTLLLAGTLYIVDFQAMTQF 272
           GWW++D+R   ++E+ F   +    + L G  YI+DF AM Q+
Sbjct: 266 GWWRFDQRCEKDIEDEFLANKPNMEMYLFGKPYILDFVAMRQW 308


>AL032663-6|CAA21766.2|  349|Caenorhabditis elegans Hypothetical
           protein Y75B12B.7 protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = -1

Query: 256 WKSTMYKVPASSKVHSDSPLLKAFSNSELLRSSYFHQPKQNLLFALFSFYSAYKVRSKL 80
           W ST+ K   + K      ++ A  N       Y   PK +  F  FSFY+      +L
Sbjct: 133 WSSTLAKTSTARKTSLIVIIISAMYNLSATHFKYKITPKSDDAFCAFSFYTGASSERRL 191


>AF025463-4|AAB71010.2|  344|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 3 protein.
          Length = 344

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/72 (20%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = +1

Query: 154 NMMSVATLN*KMPSIMENQSVLYYWLGLCTLLTSKQ*LNSVEVIILAGGGCKGIPHGYLP 333
           N + +  ++ K P ++++ S+L+    LC L +    + +++ I+ +G     I HG   
Sbjct: 34  NTLLIILISTKTPKLLQSYSMLHLNFALCDLFSCLAGMLALQKIVFSGWSLTYIFHGACG 93

Query: 334 KV----IFFVHI 357
           ++     +F+H+
Sbjct: 94  QISSYFCYFLHV 105


>Z75546-1|CAA99889.1|  546|Caenorhabditis elegans Hypothetical
           protein R05D11.1 protein.
          Length = 546

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 126 KSRFCLGWWKYDERSNSELENAFNNGESECTLLLAGTLYI 245
           +SRF LGW+    RS    E     G+     LLAG +Y+
Sbjct: 387 RSRFSLGWYNNPNRSPQTAEVRGLIGKGVRFYLLAGEVYV 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,541,584
Number of Sequences: 27780
Number of extensions: 339073
Number of successful extensions: 683
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)