Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1875
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.10 |||mitochondrial intermembrane space protein sorting p... 50 5e-07
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 0.57
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 29 1.0
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 28 1.8
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 3.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.1
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 26 7.1
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 26 7.1
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 25 9.4
>SPBC36.10 |||mitochondrial intermembrane space protein sorting
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 49.6 bits (113), Expect = 5e-07
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +1
Query: 1 MTLKTTNLTFCHYIAVDETVRYTPHPSDSSKTLLKQEAVVTVQGV--PLSSYMEDLLTNK 174
+TL T+NLTF + VDETV Y+PHP + T+ +QEA + LS+ +E +
Sbjct: 90 LTLLTSNLTFSDRLRVDETVTYSPHP-ELEATVFQQEARIEALACMKRLSNLIEQWSVDG 148
Query: 175 ISLNAGKGRQAIEWVIGKFDTEI 243
A +G++ E V+ K + +
Sbjct: 149 FGKKASRGKEGFESVLEKINMSV 171
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.5 bits (63), Expect = 0.57
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 244 KELASSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDIEKLTK 399
K L + +S ++ LSQ K ++ +TTS D +S+ + D+++ L K
Sbjct: 689 KLLLNEQIESLNDQLSQLKTEMESVTTSKESLADYLSNLKERHNDELDSLNK 740
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 163 LTNKISLNAGKGRQAIEWVIGKFDTEIKELASSACKSTDELLSQTK 300
L N++ +++ + +WV K D E+KE+ + TD L T+
Sbjct: 641 LVNRLDVDSFLHPKTPKWVFNKQDQEVKEIKALTSTVTDSTLVDTQ 686
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 286 LSQTKKSIDDITTSARRSMDDISSKAKS 369
L KKS DDITT +R M+D S +S
Sbjct: 177 LCSPKKSKDDITTPKKRLMEDTYSPRES 204
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 374 SVLFALDEISSIDLLADVVMSSIDFFVCDNNSSVLLQAELA 252
+++ L I LL +++ S+ CDNN + +LQ +A
Sbjct: 554 NIIDKLTSNEQISLLLKIIIPSLTTLACDNNGTHVLQKCIA 594
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 3.1
Identities = 30/116 (25%), Positives = 46/116 (39%)
Frame = -3
Query: 386 SISSSVLFALDEISSIDLLADVVMSSIDFFVCDNNSSVLLQAELASSLISVSNFPITHSI 207
SISS+V + SS A S+ N SS+L + +S+ +S +N S
Sbjct: 244 SISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSA 303
Query: 206 ACLPLPAFREILLVKRSSM*LLRGTPCTVTTASCFSNVFEESEGCGVYRTVSSTAM 39
+ PL + SS L + TTA+ S+ S + SST +
Sbjct: 304 SSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPL 359
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = +1
Query: 10 KTTNLTFCHYIAVDETVRYTPHPSDSSKTLLKQEAVVTVQGVPLSSYMEDLLTNK 174
+TT +T E PHP +S LL PL+ Y+ ++ N+
Sbjct: 77 ETTTVTPTVTATAQELSTLNPHPENSKIVLLMGSNAQNDPSSPLNPYIRTIIKNR 131
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 88 SKTLLKQEAVVTVQGVPLSSYMEDLLTNKISLN 186
S L ++++ V+GV +++ L TNKI+L+
Sbjct: 22 SVCLNSSKSLIRVEGVDAVKFLQGLTTNKITLD 54
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 256 SSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDIEK 390
+SA S+DE Q + +S++ + + S+ KS L D+EK
Sbjct: 267 TSAKVSSDEYARQVDTLDTKLNSSSKSKVQEEISRLKSELRDLEK 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,923
Number of Sequences: 5004
Number of extensions: 63329
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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