Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1874
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.14 
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    25   3.0  
SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.3  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    24   7.0  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    24   9.3  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    24   9.3  

>SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 29.9 bits (64), Expect = 0.14
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +2

Query: 107 DGLQELSTVHQKLVKSLSSSHAPLRQAALQ 196
           D  +  STVHQK+ KSL +S+  LR  A+Q
Sbjct: 17  DTCKNQSTVHQKVNKSLGNSNKVLRSNAVQ 46


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 92  VLDGFDGLQELSTVHQKLVKSLSS 163
           +LD    LQELST H  L  +L+S
Sbjct: 81  LLDHAHSLQELSTTHSSLSSTLTS 104


>SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 126

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 113 LQELSTVHQKLVKSLSSSHAPLRQAALQ 196
           + E+ +  QKL  SL +SH  LRQ + +
Sbjct: 66  ISEVPSAKQKLADSLFTSHEYLRQTSAE 93


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 111 PSNPSSTHRQAESAVSSGRPAALYCVRRACCG 16
           PSNPS   R+   A+ + R +     R +C G
Sbjct: 25  PSNPSVIVREIPDAIDAFRESITPATRPSCLG 56


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
 Frame = +2

Query: 176 LRQAALQGCLLQLSQRPPAPCHDLVAQLDVV-VRQYLPRNNRISVYEQSL 322
           +  + L  CLL     PP P   L A+  +      LP     S +E SL
Sbjct: 194 IHNSHLATCLLHSLSEPPTPASTLTAEAALEDCESNLPLTETFSNFEVSL 243


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 325 VQALLVNRYPVVPGQVLSNDDVELRDEVVAGR 230
           V+ LL+N  PV+ G  L N  ++    +V GR
Sbjct: 8   VKYLLINSAPVILGYALQN-SLQTSSVIVTGR 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.130    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,048,333
Number of Sequences: 5004
Number of extensions: 17903
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)