Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1874
(380 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1013 - 7931756-7935109 31 0.23
02_03_0345 + 17973509-17974131,17974207-17974537,17974624-179749... 30 0.54
12_02_0557 + 20441067-20441397,20441415-20442340 27 3.8
08_01_0263 + 2141679-2141835,2142033-2142448 27 3.8
01_05_0792 - 25275013-25275551,25275715-25275907 27 3.8
09_06_0081 + 20745627-20748144,20748211-20748308 27 5.0
12_01_0929 - 9229172-9229483,9230009-9230359 27 6.6
08_01_1058 + 10765837-10766325 27 6.6
07_03_1233 + 25057139-25057262,25058340-25058911 27 6.6
04_04_1578 + 34569091-34569966 27 6.6
01_06_1732 - 39531577-39531726,39531809-39531925,39532175-395323... 27 6.6
08_02_0126 + 12835431-12838183,12838471-12838566,12838920-128389... 26 8.7
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 26 8.7
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795... 26 8.7
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 31.5 bits (68), Expect = 0.23
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Frame = -3
Query: 270 TTTSSCATRSWQ-GAGGRCDN---CRRQPCSAACRSGACDDDRDLTS 142
T CA R+ G RCD CRR C C +G C D L S
Sbjct: 299 TIVRRCADRTTPVTCGQRCDRLLPCRRHRCEKVCHTGPCGDCNVLIS 345
>02_03_0345 +
17973509-17974131,17974207-17974537,17974624-17974985,
17975314-17975572
Length = 524
Score = 30.3 bits (65), Expect = 0.54
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 113 LQELSTVHQKLVKSLSSSHAPLRQAALQGCLLQLSQRPPAPCHD 244
LQ L +K + + S HAP ++ + G LL L ++ P C D
Sbjct: 267 LQRLIDDQRKDMDADSDDHAPAKRRTMIGVLLSLQRKDPDSCPD 310
>12_02_0557 + 20441067-20441397,20441415-20442340
Length = 418
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 95 LDGFDGLQELSTVHQKLVKSLSSSHAPLRQAALQGC 202
LD D L+EL V+ ++ L A LRQ L GC
Sbjct: 290 LDAADTLEELRLVNLPDLRRLDVDAAGLRQLRLSGC 325
>08_01_0263 + 2141679-2141835,2142033-2142448
Length = 190
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 120 SCRPSNPSSTHRQAESAVSSGRPAALYCV 34
SC S+P + HR E AV GR Y +
Sbjct: 73 SCSASSPIAVHRTGEDAVELGRLGRRYFI 101
>01_05_0792 - 25275013-25275551,25275715-25275907
Length = 243
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 246 RSWQGAGGRCDNCRRQPCSAACRSGACDDDRDL 148
R WQG G CD RQ RS CD++ ++
Sbjct: 74 RDWQGVGDDCDYGLRQ---RGRRSSGCDEEGEV 103
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 27.1 bits (57), Expect = 5.0
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +2
Query: 59 PLLTALSACLCVLDGFDGLQELSTVHQKLVKSLSSSHAPLRQAALQGC-LLQLSQRPPAP 235
P T S +C G+DG ST+ + SL S AP C L + PPAP
Sbjct: 221 PRFTVSSTTICHNFGYDGASSSSTMPRVRSTSL-SLRAPAPHLRAPSCTLAPPAPTPPAP 279
>12_01_0929 - 9229172-9229483,9230009-9230359
Length = 220
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 152 SLSSSHAPLRQAALQGCLLQLSQRPPAPCHD 244
S SSS P + G +L +S R P P D
Sbjct: 43 SSSSSSRPFNSVRMDGAVLPVSSRQPPPSSD 73
>08_01_1058 + 10765837-10766325
Length = 162
Score = 26.6 bits (56), Expect = 6.6
Identities = 23/71 (32%), Positives = 30/71 (42%)
Frame = -3
Query: 258 SCATRSWQGAGGRCDNCRRQPCSAACRSGACDDDRDLTSFW*TVDSSCRPSNPSSTHRQA 79
S A RS A +R P A S C R S V + PS+ S HR+
Sbjct: 18 SNAARSILSASAAPPPAKRAPSLPAAPSAQCRRRRPPGSAVIIVVLTALPSSSSQHHRRC 77
Query: 78 ESAVSSGRPAA 46
++V GRP+A
Sbjct: 78 TASV--GRPSA 86
>07_03_1233 + 25057139-25057262,25058340-25058911
Length = 231
Score = 26.6 bits (56), Expect = 6.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 255 CATRSWQGAGGRCDNC 208
C TR GAG RCD+C
Sbjct: 83 CGTRVVAGAGYRCDHC 98
>04_04_1578 + 34569091-34569966
Length = 291
Score = 26.6 bits (56), Expect = 6.6
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -3
Query: 189 AACRSGACDDDRDLTSFW*TVDSSCRPSN-PSSTHRQAESAVSSGRP 52
AA + DDD DL + W + RP+ P+ A+ A +G P
Sbjct: 213 AAAAAADDDDDDDLDATWNAIMQKTRPATAPAMAAPPAQKAPPAGPP 259
>01_06_1732 -
39531577-39531726,39531809-39531925,39532175-39532354,
39532704-39532802,39533571-39533675,39534046-39534138,
39534243-39534326
Length = 275
Score = 26.6 bits (56), Expect = 6.6
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +2
Query: 191 LQGCLLQLSQRPPAPCHDLVAQLDVVVRQYLPRNNRISVYEQSLYWTVLFALVELGHPDL 370
+QG L +LSQ LVA+ D +++YL I+ + W L E D
Sbjct: 160 IQGTLSKLSQ--------LVAKYDGELQRYLEITTEINPQFYAFRWITLLLTQEFNFADT 211
Query: 371 VHI 379
+HI
Sbjct: 212 IHI 214
>08_02_0126 + 12835431-12838183,12838471-12838566,12838920-12838971,
12839198-12839298,12839349-12839370
Length = 1007
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -3
Query: 279 YCLTTTSSCATRSWQGAGGRCDNCRRQPCSAACRSGAC 166
Y + + RSW+ G +R CS +C +G C
Sbjct: 907 YTILAREASKKRSWKHVAGCITKVKRATCSTSC-TGQC 943
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 26.2 bits (55), Expect = 8.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 204 RQPCSAACRSGACDDDRDLTSFW*TVDSSCRPSNPSSTHRQAESAVSSGR 55
R+ +A+C SG C D R T ++ RP NP+ T R E+ + + +
Sbjct: 111 RETEAASCTSGRCTDGRQ-TMLINCLNKLSRP-NPNPTCRSNEALLDTNK 158
>05_03_0065 -
7953414-7953845,7953963-7954081,7954158-7955990,
7957103-7957559
Length = 946
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +2
Query: 332 VLFALVELGHPDLVH 376
VLFA+VELGH D+VH
Sbjct: 38 VLFAVVELGH-DIVH 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.130 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,788,492
Number of Sequences: 37544
Number of extensions: 149533
Number of successful extensions: 582
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -