Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1874
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016438-1|AAB65895.1|  406|Caenorhabditis elegans Nuclear hormo...    33   0.091
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    29   1.5  
AC006777-5|AAK72311.1|  247|Caenorhabditis elegans Hypothetical ...    28   2.0  
AF016687-4|AAC48097.1|  183|Caenorhabditis elegans Hypothetical ...    27   3.4  
AF016664-3|AAB66069.2|  315|Caenorhabditis elegans Serpentine re...    27   3.4  
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z82085-4|CAB04986.1|  249|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z50006-4|CAA90297.2|  316|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U55365-2|AAA98568.1|  184|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AF040652-2|AAB95019.1|  221|Caenorhabditis elegans Hypothetical ...    26   7.9  

>AF016438-1|AAB65895.1|  406|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 133 protein.
          Length = 406

 Score = 32.7 bits (71), Expect = 0.091
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -3

Query: 222 RCDNCR-RQPCSAACRSGACDDDRDLTSFW*TVDSSCRPSNPSSTHRQAESAVSSGRPAA 46
           RC  CR ++ C     S    +DRDL S      SS RP+N + T      A   GRP  
Sbjct: 62  RCKICRLKKCCEVGMNSSKFQNDRDLIS------SSLRPTNYTKTSAPQSLANFLGRPEF 115

Query: 45  LYC 37
           + C
Sbjct: 116 ILC 118


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -3

Query: 267  TTSSCATRSWQGAGGRCDNCRRQPC---SAACRS-GACDDDRDLT 145
            T SSCAT   +G  G   +C+  PC      CRS   C+ D+  T
Sbjct: 1708 TQSSCATNVCEGVCGPRGSCKTVPCPKDEPHCRSYSFCECDKGWT 1752


>AC006777-5|AAK72311.1|  247|Caenorhabditis elegans Hypothetical
           protein Y46H3D.8 protein.
          Length = 247

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
 Frame = -3

Query: 375 CTRSGCPSSTSANRTVQYKLCS*TDILLFLGRYCLTTTSSCATRSWQGAGGRCDNCRRQP 196
           C   GC  S  A       +C+   +  F+  YC  T S CA+ S   A     +C    
Sbjct: 153 CNDGGCVDSVVACAN-DISICTTVGLQDFVNTYCQKTCSRCAS-STTTASSSSSSCTSYT 210

Query: 195 C--SAACRSGACD 163
              S+AC S A +
Sbjct: 211 ADSSSACASWAAN 223


>AF016687-4|AAC48097.1|  183|Caenorhabditis elegans Hypothetical
           protein T21D12.12 protein.
          Length = 183

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 279 YCLTTTSSCATRSWQGAGGRCDNCR-RQPCSAACRSGACDDD 157
           Y    T +C    +QG  G  +  + ++ C +ACR+    DD
Sbjct: 43  YFHKNTRTCQPFFYQGCDGNSNRFQSKEACESACRNATASDD 84


>AF016664-3|AAB66069.2|  315|Caenorhabditis elegans Serpentine
           receptor, class i protein38 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 32  LTQYSAAGRPLLTALSACLCVLDGFDGLQELSTVHQKLVKSLSSSHA 172
           L Q++A+   L+  L   L +L  FDG QE+S +   +  + SS +A
Sbjct: 243 LAQFAASSLLLIPLLCFSLVLLLKFDGSQEISNIILTVFSTRSSVNA 289


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical
           protein T20F7.5 protein.
          Length = 1065

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -2

Query: 373 HEVGVSEFDQREQNGPVQALLVNRYPVVPGQVLSNDDVELRDEVVAGR 230
           +EV  S  D +  NG +      R P +P Q  +N       ++V  R
Sbjct: 563 NEVSASRQDPQSSNGRIPGTSHRRLPEIPAQFRNNSGESTWAQIVGSR 610


>Z82085-4|CAB04986.1|  249|Caenorhabditis elegans Hypothetical
           protein ZK218.5 protein.
          Length = 249

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = -3

Query: 375 CTRSGCPSSTSANRTVQYKLCS*TDILLFLGRYCLTTTSSCATRSWQGAGGRCDNCRR-- 202
           C + GC  +          +C+   +  F+   C  T + C+T +  G  G C    R  
Sbjct: 157 CNQGGCVDAVIECAN-DISICNAVGMQDFVNLNCQKTCNRCSTTTVGGIIGGCSTYNRDS 215

Query: 201 -QPCSAACRSGACDDD 157
              C+A   +G C ++
Sbjct: 216 SNACAAWAVNGFCQNN 231


>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
           protein C11E4.6 protein.
          Length = 1170

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 167 HAPLRQAALQGCLLQLSQRPPAPCHDLVAQLDVVVRQYLPRNNRISVYEQSLYWTV 334
           ++P +    Q   L +S RPPAP  ++     + VR   P     S+  QS Y T+
Sbjct: 465 NSPSKFNEWQKSQLTISNRPPAPYDNVPNNSAIFVRPNSPIARSASLRRQSGYATL 520


>Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical
           protein C26C6.8 protein.
          Length = 273

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 340 EQNGPVQALLVNRY-PVVPGQVLSNDDVELRDEVVAGRGRALRQL 209
           +  G V ++ V+ + P  PGQ+  N    + DE+   RG  ++ +
Sbjct: 17  DNGGWVDSMQVDHFDPYTPGQLTKNFTATVADEISVTRGTTVKAI 61


>Z50006-4|CAA90297.2|  316|Caenorhabditis elegans Hypothetical
           protein T07C5.3 protein.
          Length = 316

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 191 LQGCLLQLSQRPPAPCHDLVAQLDVVVRQYLPRNNRISVYE 313
           LQ CL +  Q  PA   +LVA L+V  + Y      +S+Y+
Sbjct: 256 LQYCLTKYQQNGPARFCNLVAVLNVATQTYENILKYLSLYQ 296


>U55365-2|AAA98568.1|  184|Caenorhabditis elegans Hypothetical
           protein C12D5.4 protein.
          Length = 184

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 111 PSNPSSTHRQAESAVSSG 58
           PS P + HRQAE A++ G
Sbjct: 117 PSTPRTAHRQAELAMADG 134


>AF040652-2|AAB95019.1|  221|Caenorhabditis elegans Hypothetical
           protein T05A8.2 protein.
          Length = 221

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 108 SNPSSTHRQAESAVSSGRPAALYCVRRACCGPV 10
           SN      Q+ES+ S G     YC RR C GPV
Sbjct: 115 SNSHQPVPQSESSCS-GERVCPYCGRRNCPGPV 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.312    0.130    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,262,835
Number of Sequences: 27780
Number of extensions: 120447
Number of successful extensions: 441
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)