Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1872
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.0  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    21   9.6  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    21   9.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 369 SPSKNGASLNRPPDWNRDPLSRSSETLNGHIIL*DCAAYL 250
           SPS +   L+ PP+    P+ +S   L+ H +L   + YL
Sbjct: 50  SPSTHLMDLSSPPEHRDLPIYQSHHHLHHHQVLYQQSPYL 89


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +2

Query: 101 QNVVTTRSHCSVCDHYLDCYQQDL 172
           +N       C++ + Y DCY + L
Sbjct: 117 ENAKGETDECNIGNKYTDCYIEKL 140


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +2

Query: 101 QNVVTTRSHCSVCDHYLDCYQQDL 172
           +N       C++ + Y DCY + L
Sbjct: 117 ENAKGETDECNIGNKYTDCYIEKL 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,833
Number of Sequences: 438
Number of extensions: 2761
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)