Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1871
         (613 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2YSC6 Cluster: Putative uncharacterized protein; n=4; ...    33   4.0  
UniRef50_P26967 Cluster: Adult-specific cuticular protein ACP-20...    33   4.0  
UniRef50_Q6H469 Cluster: Putative uncharacterized protein B1250G...    33   5.3  
UniRef50_Q12AB3 Cluster: Pseudouridine synthase; n=7; Comamonada...    33   7.1  
UniRef50_Q0D7P9 Cluster: Os07g0225000 protein; n=1; Oryza sativa...    32   9.3  
UniRef50_Q01099 Cluster: Harpin hrpN; n=19; Enterobacteriaceae|R...    32   9.3  

>UniRef50_A2YSC6 Cluster: Putative uncharacterized protein; n=4;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 205

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -2

Query: 450 IAETVAGVGDQRSDLGGMGLG----QRLGDHRLAGGEGGSVRG 334
           +  TVA V D+R D GG+G G    +R  +   A  EGG  RG
Sbjct: 2   VTATVAAVADERGDCGGIGRGRGRRRRTREREAAAVEGGGGRG 44


>UniRef50_P26967 Cluster: Adult-specific cuticular protein ACP-20
           precursor; n=4; Tenebrionidae|Rep: Adult-specific
           cuticular protein ACP-20 precursor - Tenebrio molitor
           (Yellow mealworm)
          Length = 208

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = -2

Query: 438 VAGVGDQRSDLGGMGLGQRLGDHRLAGGEGGSVRGM 331
           + GVG     LGG+GLG  LG   L GG GG  RG+
Sbjct: 157 LGGVGLGGVGLGGVGLGGGLGGVGLLGGRGGLDRGI 192


>UniRef50_Q6H469 Cluster: Putative uncharacterized protein
           B1250G12.15; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           B1250G12.15 - Oryza sativa subsp. japonica (Rice)
          Length = 105

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 444 ETVAGVGDQRSDLGGMGLGQRLGDHRLAGGEG-GSVRGMSEHW 319
           E   G+G  ++  GG G  +RLG  RL GG+G G+  G S  W
Sbjct: 30  ERAGGIGAHQNRTGGSG--RRLGRRRLGGGDGEGNGGGDSRQW 70


>UniRef50_Q12AB3 Cluster: Pseudouridine synthase; n=7;
           Comamonadaceae|Rep: Pseudouridine synthase - Polaromonas
           sp. (strain JS666 / ATCC BAA-500)
          Length = 544

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -2

Query: 432 GVGDQRSDLGGMGLGQRLGDHRLAGGEGGSVRG 334
           G G +RS  GG G+G   G  R  GG GG  RG
Sbjct: 498 GQGQRRSGGGGSGMGGAGGGQRRGGGGGGGNRG 530


>UniRef50_Q0D7P9 Cluster: Os07g0225000 protein; n=1; Oryza sativa
           (japonica cultivar-group)|Rep: Os07g0225000 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 194

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -2

Query: 426 GDQRSDLGGMGLGQRLGDHRLAGGEGGSVRGMSEHWSTISYWXXXXXXXXXXSDAIGSVG 247
           G +R   G +G  + +G   L G EG  V G+      ++             + +G VG
Sbjct: 124 GGRRGGEGEVGDVELVGGGELGGAEGAPVGGLRGEAGGLAAGGEEGGVRRRREEGLGGVG 183

Query: 246 DHGGG 232
            HGGG
Sbjct: 184 GHGGG 188


>UniRef50_Q01099 Cluster: Harpin hrpN; n=19; Enterobacteriaceae|Rep:
           Harpin hrpN - Erwinia amylovora (Fire blight bacteria)
          Length = 403

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -2

Query: 432 GVGDQRSDLGGMGLGQRLGDHRLAGGEGGS 343
           GV D  S L G GL Q LG+  L GG+GG+
Sbjct: 201 GVTDALSGLMGNGLSQLLGNGGLGGGQGGN 230


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 340,965,192
Number of Sequences: 1657284
Number of extensions: 4892248
Number of successful extensions: 15716
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15696
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)