Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1869
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.38 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    28   1.2  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   2.0  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    26   6.2  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    25   8.2  

>SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +2

Query: 107 DGLQELSTVHQKLVKSLSSSHAPLRQAALQ 196
           D  +  STVHQK+ KSL +S+  LR  A+Q
Sbjct: 17  DTCKNQSTVHQKVNKSLGNSNKVLRSNAVQ 46


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
 Frame = -3

Query: 627 SGSMLDTSVAFFEFKSLSSVNRCSINISTTCRSARLSVLPRNLSTAAL------RSCLGR 466
           + S++ +S +F +F SLSS    + N ++   S  L+    +LST +        S   +
Sbjct: 495 NSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPSTTIPTSNSSVSLQ 554

Query: 465 T*FLSAVAMPLTTSSVQ*WVGSVSTKSTAMCTRSGCPSSTSANRTVQYKLCS*TDILLFL 286
           T     ++ P+ +SS+     + ++ ST   T S  PS+TS   T      S TD    L
Sbjct: 555 TSSSLIISSPIISSSL-----TATSTSTPALTHSITPSNTS--YTSSLIPSSSTDYSSSL 607

Query: 285 GRYCLTATSSCATRS 241
              C   TS  ++ S
Sbjct: 608 ITVCSNVTSEISSTS 622


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 981

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +2

Query: 296  RISVYEQSLYWTVLFA--LVELGHPDLVHIAVDFVLTDPTHYCT-ELVVRGIATALRNQV 466
            + S Y  S Y   L    + +LGHP +  I   F++ +     + +   R +ATALR  +
Sbjct: 789  KASGYALSKYVAELLCRKISDLGHPLIYVIRPGFIIANDGEILSRDFFWRFVATALRMGI 848

Query: 467  LPKQLRSAAVDKFLGSTDS 523
             P+   S ++   + +TD+
Sbjct: 849  WPQSDESQSLVFHISTTDA 867


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 245 LVAQLDVAVRQYL-PRNNRISVYEQSLYWTVLFALVELGHPDLVHIAVDFVLTDPTH 412
           L+A L    R  L  RNNR+    +S     + ALVE  + ++V  A+DF+    T+
Sbjct: 401 LIATLRTLARLALNDRNNRLLQDLKSNVIANIIALVETDNEEIVAAALDFLYQYTTY 457


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 92  VLDGFDGLQELSTVHQKLVKSLSS 163
           +LD    LQELST H  L  +L+S
Sbjct: 81  LLDHAHSLQELSTTHSSLSSTLTS 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,030
Number of Sequences: 5004
Number of extensions: 34026
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)