Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1869
(719 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016438-1|AAB65895.1| 406|Caenorhabditis elegans Nuclear hormo... 33 0.27
Z81513-11|CAB04184.2| 254|Caenorhabditis elegans Hypothetical p... 30 1.9
Z72517-2|CAA96694.1| 490|Caenorhabditis elegans Hypothetical pr... 30 1.9
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81062-7|CAB02942.1| 755|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z50006-4|CAA90297.2| 316|Caenorhabditis elegans Hypothetical pr... 28 7.7
>AF016438-1|AAB65895.1| 406|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 133 protein.
Length = 406
Score = 32.7 bits (71), Expect = 0.27
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -3
Query: 222 RCDNCR-RQPCSAACRSGACDDDRDLTSFW*TVDSSCRPSNPSSTHRQAESAVSSGRPAA 46
RC CR ++ C S +DRDL S SS RP+N + T A GRP
Sbjct: 62 RCKICRLKKCCEVGMNSSKFQNDRDLIS------SSLRPTNYTKTSAPQSLANFLGRPEF 115
Query: 45 LYC 37
+ C
Sbjct: 116 ILC 118
>Z81513-11|CAB04184.2| 254|Caenorhabditis elegans Hypothetical
protein F26D2.14 protein.
Length = 254
Score = 29.9 bits (64), Expect = 1.9
Identities = 40/136 (29%), Positives = 53/136 (38%), Gaps = 8/136 (5%)
Frame = -3
Query: 561 CSINISTTCRSARLSVLPRNLSTAALRSC-LGRT*FLSAVAMPLTTSSVQ*WVG-SVSTK 388
C+ + CR R + +A C LG + AVA S+ +G V
Sbjct: 127 CATIVPAQCRDQRWRTIIAQDCPSACGFCNLGGC--VDAVADCANDPSICNSIGMQVFVN 184
Query: 387 STAMCTRSGCPSSTSANRTVQYKLCS*TDILLFLGRYCLTATSSCATRSWQGAGGRCDNC 208
T S CPSSTSA + S T I Y ++SSCA +W A G C N
Sbjct: 185 QNCQRTCSRCPSSTSARIS-----SSTTSITSTCSSYNPDSSSSCA--AW-AANGFCTNT 236
Query: 207 ------RRQPCSAACR 178
R+ C+ CR
Sbjct: 237 HYTVARRKATCATTCR 252
>Z72517-2|CAA96694.1| 490|Caenorhabditis elegans Hypothetical
protein T28F4.3 protein.
Length = 490
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +2
Query: 413 YCTELVVRGIATALRNQVLPKQLRSAAVDKFLGSTDSRAERHVVLILMLHLFTDDKLL-N 589
Y +++++R ++ ++L K+LR+ LG+ S+ + +++LM+ LF DDK++
Sbjct: 268 YLSQIMIRENSSVDMVEIL-KRLRTMR----LGAVQSQLQYVYLVVLMIELFIDDKIIKR 322
Query: 590 SKNATDVSNMDPDVLMTSMERITLLYKTLRQTKETESKR 706
+ N + DV I + RQ K+ E ++
Sbjct: 323 NANYESLLKKYADVTRKVTAAIMEEEEKRRQRKKREEEK 361
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 29.9 bits (64), Expect = 1.9
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = -3
Query: 450 AVAMPLTTSSVQ*WVGSVSTKSTAMCTRSGCPSSTSANRTVQYKLCS*TDILLFLGRYCL 271
A+ + S VQ V VS+K A+ T S S+TS++ T L S + + G C
Sbjct: 10 AILAIIAISQVQSAVLPVSSKEVALVTSSTDASTTSSSETSIDTLGS-SRVKRQGGCGCC 68
Query: 270 TATSSCATRSWQGAGGRCDNCRRQP-CSAACR 178
C G GG C C +P C CR
Sbjct: 69 GCGCGCC--GCGGGGGGCGCCCCRPRCCCCCR 98
>Z81062-7|CAB02942.1| 755|Caenorhabditis elegans Hypothetical
protein F15A4.8a protein.
Length = 755
Score = 29.1 bits (62), Expect = 3.3
Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 5/141 (3%)
Frame = -3
Query: 648 SIDVISTSGSMLDTSVAFFEFKSLSSVNRCSINISTTCRSARLSVLPRNLSTAALRSCLG 469
++D+ ++GS+L+ S A S ++ + + S + + ++ ST ++S
Sbjct: 365 TVDMDDSAGSLLNASSARPNVTSTTTAPTTESSTTPPVESTTTAPVTKSSSTPPVKSTT- 423
Query: 468 RT*FLSAVAMPLTTSSVQ*WVGSVSTKSTAMCTRSGC-----PSSTSANRTVQYKLCS*T 304
++ V MP TT S ST S+ +C++ S+TS + KL T
Sbjct: 424 ----IAPVTMPSTTEKTTFTSTSSSTTSSPVCSKRTVGFFTGNSTTSITQDQMRKLTHAT 479
Query: 303 DILLFLGRYCLTATSSCATRS 241
+FL A S T++
Sbjct: 480 FCRIFLNSTFRDAAKSANTKT 500
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = +1
Query: 466 PPQAAPQRRGGQVPG----QHRQPRGTTRRADINAASVY*RQA 582
PP AAPQ+ QVPG H+QP G + +N S + Q+
Sbjct: 31 PPPAAPQKPA-QVPGGFPPPHQQPNGQYQNGGLNGNSSHLAQS 72
>Z50006-4|CAA90297.2| 316|Caenorhabditis elegans Hypothetical
protein T07C5.3 protein.
Length = 316
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 191 LQGCLLQLSQRPPAPCHDLVAQLDVAVRQYLPRNNRISVYE 313
LQ CL + Q PA +LVA L+VA + Y +S+Y+
Sbjct: 256 LQYCLTKYQQNGPARFCNLVAVLNVATQTYENILKYLSLYQ 296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,757,756
Number of Sequences: 27780
Number of extensions: 216187
Number of successful extensions: 942
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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