Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1866
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0013 - 103484-103493,103787-103897,104279-104781,105119-10... 73 2e-13
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995... 73 3e-13
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132... 62 3e-10
12_01_0022 + 165056-165408,165477-165624,166248-166248,166305-16... 53 2e-07
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 33 0.32
01_06_0641 - 30782235-30782423,30782498-30782605,30782848-307829... 31 0.74
11_04_0370 + 16891334-16891469,16891556-16891707,16893277-168936... 31 0.98
01_03_0259 - 14312197-14312259,14312384-14312456,14312651-143127... 31 0.98
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659... 31 1.3
09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121 30 2.3
01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990 29 5.2
>11_01_0013 -
103484-103493,103787-103897,104279-104781,105119-105189,
105607-105685,106530-107153
Length = 465
Score = 73.3 bits (172), Expect = 2e-13
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Frame = +1
Query: 340 VLSFHDILLHRSDIELLEGPHWLNDTIISFYFEYLEKVVFSKESDLLFVSPEVTQCI-KM 516
VLS D++L R D+ +L GPH+LND II+FY +L + DLL + P + + +
Sbjct: 13 VLSHGDVVLFRCDLTILRGPHFLNDRIIAFYLAHL-AADHDADDDLLLLPPSIPYLLSNL 71
Query: 517 VQTEEIKTFLEPLDVNLKKFVFFALNDNNTPDMA---GGSHWSLLVYSRPENC----FFH 675
+ +PL + ++ V +NDN PD++ GGSHW+LLV F H
Sbjct: 72 PDPASVAAVADPLRLASRRLVLLPVNDN--PDVSHAEGGSHWTLLVLDNSNAVSGPRFVH 129
Query: 676 LDSSQATN 699
DS TN
Sbjct: 130 HDSLPPTN 137
>12_01_0013 -
99290-99299,99593-99703,100085-100587,100925-100995,
101413-101491,102336-102956
Length = 464
Score = 72.5 bits (170), Expect = 3e-13
Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Frame = +1
Query: 340 VLSFHDILLHRSDIELLEGPHWLNDTIISFYFEYLEKVVFSKESDLLFVSPEVTQCI-KM 516
VLS D++L R D+ +L GPH+LND II+FY +L + DLL + P V + +
Sbjct: 13 VLSHGDVVLLRCDLTILRGPHFLNDRIIAFYLAHL--AADHHDDDLLLLPPSVPYLLSNL 70
Query: 517 VQTEEIKTFLEPLDVNLKKFVFFALNDNNTPDMA---GGSHWSLLVYSRPENC----FFH 675
+ +PL + ++ V +NDN PD++ GGSHW+LLV F H
Sbjct: 71 PDPASVAAVADPLRLASRRLVLLPVNDN--PDVSHAEGGSHWTLLVLDNSNAVSGPRFVH 128
Query: 676 LDSSQATN 699
DS TN
Sbjct: 129 HDSLPPTN 136
>12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,
1323291-1324903,1324991-1325077,1326983-1327251
Length = 1051
Score = 62.5 bits (145), Expect = 3e-10
Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 4/147 (2%)
Frame = +1
Query: 316 TKMAKASVVLSFHDILLHRSDIELLEGPHWLNDTIISFYFEYLEKVVFSKESDLLFVSPE 495
T + V+S D L SD+ L P++L D +I+F ++ + + LL VSP
Sbjct: 837 TTRTRGKSVMSHRDATLFSSDVASLAAPNFLLDGVINFVMAHMTTEL--GDESLLLVSPS 894
Query: 496 VTQCIKMVQTEEIKTFLEPLDVNL---KKFVFFALNDNNTPDMAG-GSHWSLLVYSRPEN 663
V + +Q E +T + L ++ V F +N++ D A GSHWSLLV
Sbjct: 895 VASLLANLQDYEPETVADTAQALLLASRRMVLFPVNNSERLDKADDGSHWSLLVLDNITG 954
Query: 664 CFFHLDSSQATNHDVAWEFASHIMQYL 744
F H DS N A A + L
Sbjct: 955 RFVHHDSMDGANLPAATRLADALRPLL 981
>12_01_0022 +
165056-165408,165477-165624,166248-166248,166305-166602,
166819-167387,167554-168377
Length = 730
Score = 53.2 bits (122), Expect = 2e-07
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Frame = +1
Query: 340 VLSFHDILLHRSDIELLEGPHWLNDTIISFYFEYLEKVVFSKESDLLFVSPEVTQCIKMV 519
++S I L+ SD++ L GPHW+ D I+ + + + LL V P T +
Sbjct: 508 LISCDGINLYESDLDSLRGPHWVTDAILGYALAKFSRAY--SDDGLLLVQP--TNAALLN 563
Query: 520 QTEEIKTFLEPLDVNLKKFVFFALNDNNTPDMAG-GSHWSLLVYSRPEN----CFFHLDS 684
+ + L + ++ V +NDN + AG G HWSLLV + N F H DS
Sbjct: 564 NKHYVAAEADHLLLASRRLVLIPVNDNLDFNQAGDGKHWSLLVIHKTSNDGVIQFIHHDS 623
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 32.7 bits (71), Expect = 0.32
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 577 VFFALNDNNTPDMAGGSHWSLLVYSR---PENCFFHLDSSQA-TNHDVAWEFASHIMQYL 744
V A N + + G+HWSLLV+ R C H DSS N A A+ ++ YL
Sbjct: 570 VVHAFNSQDPHLLGEGTHWSLLVFDRNLGGRPCLAHHDSSPGDANLRAARRLAASLLPYL 629
>01_06_0641 -
30782235-30782423,30782498-30782605,30782848-30782959,
30783429-30783526,30784249-30784336,30784780-30784875,
30785101-30785171,30786003-30786075,30787023-30787324,
30787418-30787503,30788024-30788084,30789386-30789688
Length = 528
Score = 31.5 bits (68), Expect = 0.74
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 373 SDIELLEGPHWLNDTIISFYFEYLEK 450
SDIE LE +L +I+FY +YL K
Sbjct: 310 SDIECLEPEEYLKSPVINFYMQYLRK 335
>11_04_0370 +
16891334-16891469,16891556-16891707,16893277-16893639,
16893832-16893929,16893983-16896029
Length = 931
Score = 31.1 bits (67), Expect = 0.98
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +1
Query: 493 EVTQCIKMVQTEEIKTFLEPLDVNLKKFVFFALNDNNTPDMAGGSHWSLLVYSRPENC 666
+V Q I V I L P +LK LN+ N P G + +S L R ENC
Sbjct: 625 DVNQAISTVSGGSILESLRPHHQSLKVLRMKNLNEVNYPSWLGSASFSKLTKLRLENC 682
>01_03_0259 -
14312197-14312259,14312384-14312456,14312651-14312754,
14313073-14313192,14313278-14313364,14313925-14314023,
14314110-14314203,14314298-14314368,14315258-14316040
Length = 497
Score = 31.1 bits (67), Expect = 0.98
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 337 VVLSFHDILLHRSDIELLEGPHWLNDTIISFYFEYLEK 450
VV +I++ R ++ L WLND +I+ Y E L++
Sbjct: 290 VVHESSNIVITRETLQCLNETEWLNDEVINLYLELLKE 327
>05_02_0100 +
6594787-6594878,6595443-6595728,6595809-6595887,
6595964-6596013,6597281-6597478,6597555-6597612,
6598388-6598496,6599253-6599321,6599684-6599812,
6599970-6600082,6600386-6600479,6602827-6602917,
6604145-6604233,6604715-6604856,6605849-6606196,
6606314-6607408
Length = 1013
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +1
Query: 352 HD-ILLHRSDIELLEGPHWLNDTIISFYFEYL 444
HD + + + D+ELL ++NDTII FY ++L
Sbjct: 328 HDAVSISKRDVELLLPETFVNDTIIDFYVKHL 359
>09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121
Length = 798
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1
Query: 322 MAKASVVLSFHDILLHRSDIELLEGPHWLNDTIISFYFEYLEKVVFSKESD 474
+A ASV F + L ++D+ G WLND +I Y EK +F SD
Sbjct: 724 VATASVERVFSAMSLIKTDLRNKMGDEWLNDLMIC----YTEKQIFRSISD 770
>01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990
Length = 798
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +1
Query: 322 MAKASVVLSFHDILLHRSDIELLEGPHWLNDTIISFYFEYLEKVVFSKESD 474
+A ASV F + L + D+ G WLND +I Y EK +F SD
Sbjct: 724 VATASVERVFSAMSLIKIDLRNKMGDEWLNDLMIC----YTEKQIFRSISD 770
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,501,294
Number of Sequences: 37544
Number of extensions: 318632
Number of successful extensions: 637
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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