Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1866
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125455-1|AAP13748.1| 210|Caenorhabditis elegans Ubiquitin-lik... 77 1e-14
U23412-4|AAK21468.3| 697|Caenorhabditis elegans Ubiquitin-like ... 34 0.094
AB095020-1|BAC22612.1| 697|Caenorhabditis elegans similar to SU... 34 0.094
Z48045-3|CAA88104.1| 342|Caenorhabditis elegans Hypothetical pr... 30 2.0
AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical... 29 3.5
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha... 29 4.7
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha... 29 4.7
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 28 6.2
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 28 6.2
U28739-9|AAB93451.1| 480|Caenorhabditis elegans Hypothetical pr... 28 8.2
>AF125455-1|AAP13748.1| 210|Caenorhabditis elegans Ubiquitin-like
protease protein 3 protein.
Length = 210
Score = 77.0 bits (181), Expect = 1e-14
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Frame = +1
Query: 343 LSFHDILLHRSDIELLEGPH-WLNDTIISFYFEYLEKVVFSKESDLLFVSPEVTQCIKMV 519
LS+ ++L D+ +LE W ND +++F E+LE+ + +F P+
Sbjct: 9 LSYESVVLTADDVTILEHTGCWFNDKLLTFCAEFLEQHNSAAAEIQIFTPPQTEMIRHST 68
Query: 520 QTEEIKTFLEPLDVNLKKFVFFALNDN-NTPDMAGGSHWSLLVYSRPENCFFHLDSSQAT 696
EE+ + LDVN K + F +NDN + + GGSHWSLL++ R + F H DS++
Sbjct: 69 CDEEVDMYFGCLDVNSKDLIAFIVNDNQDVTRVNGGSHWSLLIFDRKIDKFRHFDSARGH 128
Query: 697 NHDVA 711
N +A
Sbjct: 129 NLKIA 133
>U23412-4|AAK21468.3| 697|Caenorhabditis elegans Ubiquitin-like
protease protein 1 protein.
Length = 697
Score = 34.3 bits (75), Expect = 0.094
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 358 ILLHRSDIELLEGPHWLNDTIISFYFEYL 444
I + + D+ L G HWLND II+FY + +
Sbjct: 501 IQICKKDLATLSGLHWLNDEIINFYLQLI 529
>AB095020-1|BAC22612.1| 697|Caenorhabditis elegans similar to
SUMO-1-specific protease protein.
Length = 697
Score = 34.3 bits (75), Expect = 0.094
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 358 ILLHRSDIELLEGPHWLNDTIISFYFEYL 444
I + + D+ L G HWLND II+FY + +
Sbjct: 501 IQICKKDLATLSGLHWLNDEIINFYLQLI 529
>Z48045-3|CAA88104.1| 342|Caenorhabditis elegans Hypothetical
protein C41C4.6 protein.
Length = 342
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 313 YTKMAKASVVLSFHDILLHRSDIELLEGPHWLNDTIISFYFEYL-EKVVFSKESDLLFVS 489
Y M + F I + SD L+ LNDT+I FY ++ E V+ + V
Sbjct: 116 YAAMEMLRIRFPFQSIAIRISDFCCLQEKDLLNDTMIDFYLNHIVEHVLPDSNGSNVTVL 175
Query: 490 PEV 498
P +
Sbjct: 176 PSI 178
>AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical
protein Y73B3A.5 protein.
Length = 310
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 457 FSKESDLLFVSPEVTQCIKMVQTEEIKTFLEPLDVNLKKFVF-FALNDNNTPDMA 618
F +DLL + + K VQ + + T L V KKFV+ F D +TP A
Sbjct: 7 FPSFNDLLHFEKNIFRISKNVQLQNLLTKLNIFQVIGKKFVYRFVTTDAHTPPTA 61
>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase 2
protein.
Length = 1668
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 496 VTQCIKMVQTEEIKTFLEPLDVNLKKFVFFALNDNNTPDMAGGS 627
V Q ++ + +K E LD KK FFAL+ TPD AG S
Sbjct: 1531 VVQNLESSRKSMMKRKTETLDAAFKKR-FFALSSEQTPDPAGFS 1573
>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
protein 2 protein.
Length = 1668
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 496 VTQCIKMVQTEEIKTFLEPLDVNLKKFVFFALNDNNTPDMAGGS 627
V Q ++ + +K E LD KK FFAL+ TPD AG S
Sbjct: 1531 VVQNLESSRKSMMKRKTETLDAAFKKR-FFALSSEQTPDPAGFS 1573
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = -2
Query: 485 TNNRSLSLLNTTFSRYSK*NDIIVSFNQ 402
++NR +SL N TFS ++ + +I+S+N+
Sbjct: 736 SHNRLISLENNTFSNLTRLSTLIISYNK 763
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = -2
Query: 485 TNNRSLSLLNTTFSRYSK*NDIIVSFNQ 402
++NR +SL N TFS ++ + +I+S+N+
Sbjct: 736 SHNRLISLENNTFSNLTRLSTLIISYNK 763
>U28739-9|AAB93451.1| 480|Caenorhabditis elegans Hypothetical
protein C17G10.1 protein.
Length = 480
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 484 VSPEVTQCIKMVQTEEIKTFLEPLDVNLKKFVFFALNDN 600
+S E Q K Q E +TF + ++NL KF+F ++DN
Sbjct: 269 ISKEYLQ--KERQDEVQQTFADSSELNLSKFIFEEIHDN 305
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,966,746
Number of Sequences: 27780
Number of extensions: 316301
Number of successful extensions: 706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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