Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1866
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.1  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 469 SLY*TQLFRDIQSKMILSYHSTNADL 392
           SLY  QL R++ +   L YH+ + D+
Sbjct: 98  SLYYPQLLREMSALFKLFYHAKDFDI 123


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 469 SLY*TQLFRDIQSKMILSYHSTNADL 392
           SLY  QL R++ +   L YH+ + D+
Sbjct: 98  SLYYPQLLREMSALFKLFYHAKDFDI 123


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 644 TSRLQWEPPAI 612
           T R++W+PPAI
Sbjct: 134 TGRVEWKPPAI 144


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -3

Query: 520 EPFLYIVLPLETQIIDHSLY*TQLFRDIQSKMILSYHSTNADL-PVILYQTDEAIYHENL 344
           EPF +++LPL     D      Q   + Q+ ++L +    A+    +LYQ +  I     
Sbjct: 316 EPFPFLMLPLGADDPDSLRRKRQKINNSQNALVLRHVQAEAEKHAAMLYQYNFNIIISEP 375

Query: 343 TQQMLLPFLY 314
           T++ + P+ Y
Sbjct: 376 TER-ISPYGY 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,890
Number of Sequences: 438
Number of extensions: 3979
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)