Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1864
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0037 - 27229351-27230037,27230305-27230330,27230536-27231961     29   3.1  
01_05_0561 - 23296977-23297174,23297304-23297431,23297990-232983...    29   5.3  
01_01_0384 - 2970369-2970726,2970812-2970882,2971428-2971509,297...    28   9.3  

>05_07_0037 - 27229351-27230037,27230305-27230330,27230536-27231961
          Length = 712

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 414 IQRSTALARASVSNSLTFSP*AHLPVRAKLEQPECNIRNTWNRLPAIR*GNKEDSLCN 587
           +Q+    A+A VS SL+    + L V  +      ++ + WN  P +    K DS+ N
Sbjct: 112 MQKDVLYAKAVVSKSLSIQKLSELSVDCQKLAGSDDLSSEWNHFPMLAINRKIDSILN 169


>01_05_0561 -
           23296977-23297174,23297304-23297431,23297990-23298362,
           23298629-23299069
          Length = 379

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 294 NNTGEIFS*SPFNMVRFLINFKTRFSIRTVCL 199
           N +  IF  SPF+  RFL N +TRFS+ +  L
Sbjct: 251 NGSASIFDLSPFSPARFL-NKRTRFSLTSAKL 281


>01_01_0384 -
           2970369-2970726,2970812-2970882,2971428-2971509,
           2971757-2971818,2972308-2972401,2972502-2972569,
           2972681-2972747,2972830-2972960,2973093-2973200,
           2973577-2973642,2973706-2973774,2973990-2974115,
           2974167-2974284,2974741-2974847,2975889-2976009,
           2976162-2976235,2976955-2977051,2977564-2977679,
           2978218-2978313,2978426-2978635,2979101-2979253
          Length = 797

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = -2

Query: 482 VSLRAERERIANTSPSKSS--ASLYLLPHRIRDPLRRSGEKLSGLHRRFLVSEVCA*LA 312
           ++L+ ++ ++  TS S SS  A   +L HR    L  +G + SG+++  LVSE+ + LA
Sbjct: 296 LALQVDKLKVLATSLSNSSSKAEKRILDHR---DLHLAGCRYSGIYQHLLVSELYSLLA 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,646,073
Number of Sequences: 37544
Number of extensions: 326627
Number of successful extensions: 717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)