Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1864
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical...    32   0.51 
AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.      32   0.51 
Z81542-6|CAE17834.1|  365|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical
           protein Y75B8A.22 protein.
          Length = 1353

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 478 LTYPSERSWNSLNAIFGIPGIGYQQLGREIKKIVSA 585
           L + S + W    AIFG PGIG ++   E+K I+ A
Sbjct: 752 LYHTSRKLWPGDEAIFGAPGIGVEEEIAELKAILEA 787


>AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.
          Length = 1353

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 478 LTYPSERSWNSLNAIFGIPGIGYQQLGREIKKIVSA 585
           L + S + W    AIFG PGIG ++   E+K I+ A
Sbjct: 752 LYHTSRKLWPGDEAIFGAPGIGVEEEIAELKAILEA 787


>Z81542-6|CAE17834.1|  365|Caenorhabditis elegans Hypothetical
           protein F49A5.9 protein.
          Length = 365

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 659 YYQPGSCVIIKQLFDSLDEWLVLSVAETIFFI 564
           +Y  G+C+ +   +DS D W  +  AE  +F+
Sbjct: 323 HYTNGTCLFLNLAWDSTDHWYTVDCAEESWFL 354


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical
           protein K10C2.1 protein.
          Length = 2314

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 493 ERSWNSLNAIFGIPGIGYQQLGREIKKIVSATDRTNH 603
           +R WNSLN ++ I    YQQ  R     +S   +  H
Sbjct: 836 QRFWNSLNDVYNIYQDCYQQADRAFGSRMSIKQKKEH 872


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,872,687
Number of Sequences: 27780
Number of extensions: 305656
Number of successful extensions: 643
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)