Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1864
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   1.8  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   2.3  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   3.1  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   3.1  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   3.1  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   3.1  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   3.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.4  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 741 YSFRLFGDRWCYSC 700
           +S  +FG RW +SC
Sbjct: 57  FSLPIFGTRWIFSC 70


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 663 LLTPRTKTYCYAGKSS 710
           L TPRT T C +G SS
Sbjct: 9   LATPRTGTNCSSGSSS 24


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/30 (23%), Positives = 20/30 (66%)
 Frame = +2

Query: 173 TFQIIKLNHKHTVRIENLVLKLIKKRTILK 262
           TF++ K+   HT+  +  +++++K+  +L+
Sbjct: 11  TFRLSKVMLDHTINSKKTIMRILKEVCVLQ 40


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 13  KISHYLGNA*DSWSLLNWARIKFYNGNYSANYTIP 117
           K S+Y     ++++  N+ ++++YN NY     IP
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIP 124


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 13  KISHYLGNA*DSWSLLNWARIKFYNGNYSANYTIP 117
           K S+Y     ++++  N+ ++++YN NY     IP
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIP 124


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 13  KISHYLGNA*DSWSLLNWARIKFYNGNYSANYTIP 117
           K S+Y     ++++  N+ ++++YN NY     IP
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIP 124


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 13  KISHYLGNA*DSWSLLNWARIKFYNGNYSANYTIP 117
           K S+Y     ++++  N+ ++++YN NY     IP
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIP 124


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 588 CCRDYLLYFPT 556
           CCR +L  FPT
Sbjct: 400 CCRSWLSKFPT 410


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 588 CCRDYLLYFPT 556
           CCR +L  FPT
Sbjct: 400 CCRSWLSKFPT 410


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 311 LVFPVPITQEKFLVRVLSIWFVF*STLKQG 222
           LV+P P     +L+ +L I F F + L  G
Sbjct: 38  LVYPEPNPSLHYLLALLYILFTFLALLGNG 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,615
Number of Sequences: 438
Number of extensions: 4081
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)