Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1861
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    27   1.1  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    26   2.6  
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    25   6.0  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   6.0  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   7.9  

>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = -3

Query: 475 NGAITLMEQK-LMKSTIASEAKVKRCRPLSSRNAPECSFLCVRTNLSLNIRISELT 311
           N + +LME+  ++ S+  S+    RC     ++ P+  FL +++ +SL++  +ELT
Sbjct: 314 NSSSSLMEKDAILSSSSWSQLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELT 369


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -3

Query: 376 PECSFLCVRTNLSLNIRISE----LTSSFGSPDHDCVRRNRPEFGGNLPPPHVSAKS 218
           P  SFL    N++ N+ + +      S+F  PD+  ++  + EF G LP   V + S
Sbjct: 407 PAISFLETDNNVTTNVCVGKEWYRYPSTFFLPDNSRLKFVKSEFDGILPGEFVESNS 463


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 317 LGNPNIERKIGAHTKKATFRRIPAA 391
           L    + +K+  H+K+A + R+PAA
Sbjct: 63  LAERGVIQKVDQHSKQAIYTRVPAA 87


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -1

Query: 213 HALMFY*FYYQKLVCLVILAYCHYLNFHF*SSDLRPEASS--HRNHHSLNPFFLNRNS 46
           H+L+F  F+   ++ LV     HYLN     S  +PEA     +   S N  FL   S
Sbjct: 58  HSLLFVYFFLTLIILLVSFMGFHYLN-----SIPKPEAEPDYRKKQESKNQDFLKSQS 110


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 263 RVWWEPSSAPCLRQISSMR*CFINS 189
           ++WW PSS+  +     M   F+NS
Sbjct: 356 KLWWFPSSSIIIILFDDMELAFVNS 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,007
Number of Sequences: 5004
Number of extensions: 38917
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)