Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1861
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351...    28   3.4  
04_03_0461 - 16165126-16165419,16165947-16166195,16168510-161686...    28   3.4  
09_02_0027 + 3105963-3106276,3106298-3107027,3107069-3107134,310...    27   6.0  
07_03_0912 + 22544144-22545589                                         27   6.0  
02_02_0296 + 8678488-8679798                                           27   6.0  
01_06_0086 + 26293452-26294030,26295309-26295353,26295543-26296175     27   7.9  

>10_08_0267 -
           16333239-16333820,16333904-16334842,16334920-16335172,
           16336837-16337063,16338189-16339388
          Length = 1066

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
 Frame = +2

Query: 338 RKIGAHTKKATFRRIPAAERPTAFNLGFTRDCRFH-------ELLFHERYGSILP 481
           R IG    +   RR+   E P  FN    RDCR +       +L+ ++ +G  LP
Sbjct: 69  RLIGGGLDRCAGRRVYMYELPPRFNAELVRDCRLYSRSMDVCKLVVNDGFGPALP 123


>04_03_0461 -
           16165126-16165419,16165947-16166195,16168510-16168645,
           16171251-16171469,16172738-16173116,16173660-16173918,
           16176052-16176315
          Length = 599

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 234 WGGGRFPPNSGRLRRTQSWSGDPNDDVSSEIRILRERLVRTQRKLH 371
           WG      ++  L+R++ W  +  D +  ++RIL E    T +K+H
Sbjct: 75  WGDFFINYDTKPLQRSEDWMMEKADKLKQDVRILFETHNDTAKKMH 120


>09_02_0027 +
           3105963-3106276,3106298-3107027,3107069-3107134,
           3107192-3107324,3108985-3109088
          Length = 448

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 270 LRRTQSWSGDPNDDVSSEIRILRERLVRTQR-KLHSGAFRLLSGRQRLTLASLAIVDFMS 446
           + +   + G PN+D ++ +     + V +   +L    F LL   ++   A+ A ++   
Sbjct: 86  MAQASPFCGMPNEDANAHLHTYTMKGVSSDTVRLRLFPFSLLGKAKQWFYANRATINTWD 145

Query: 447 FCSMSVMAPFFP 482
            CS + ++ FFP
Sbjct: 146 RCSTTFLSKFFP 157


>07_03_0912 + 22544144-22545589
          Length = 481

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 230 DMGRRKVPTKLGAIATNTIMVGRP-ER*CQLGNPNIERKIGAHTKKATFRRIPAAERPT 403
           + G+R +    GA++   +++  P E    +   ++ R+  A     TFRR+PA E PT
Sbjct: 22  EAGKRLLVAGGGAVSLTVLVMQAPTEIEASVVEAHVRRE-AASGLDVTFRRLPAVEHPT 79


>02_02_0296 + 8678488-8679798
          Length = 436

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +1

Query: 238 AEEGSHQTRGDCDEHNHGRETRTMMSARKSEY*EKDWCAHKESYIQAH 381
           A  G  Q  GDC   N+       + A    Y +  W  HK  +++ H
Sbjct: 353 AASGFFQRLGDCSTMNYDDHLFGALFAGVKRYHDASWHRHKARFLRDH 400


>01_06_0086 + 26293452-26294030,26295309-26295353,26295543-26296175
          Length = 418

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 187 VELIKHQRMLEIWRRHGAEEGSHQTRGDCDEHNHG 291
           VEL+   R+    RRHG+E  SH    D + H HG
Sbjct: 316 VELLIDTRLSPFLRRHGSESQSH----DLECHLHG 346


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,485,213
Number of Sequences: 37544
Number of extensions: 280048
Number of successful extensions: 945
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)