Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1861
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67949-9|AAM69108.1|  486|Caenorhabditis elegans Hypothetical pr...    31   0.33 
U67949-8|AAD32274.1|  626|Caenorhabditis elegans Hypothetical pr...    31   0.33 
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AB009362-1|BAA23766.1|  118|Caenorhabditis elegans protein ( Cae...    28   4.1  
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha...    27   5.4  
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha...    27   5.4  

>U67949-9|AAM69108.1|  486|Caenorhabditis elegans Hypothetical
           protein F55A4.8b protein.
          Length = 486

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = +3

Query: 267 RLRRTQSWSGDPNDDVSSEIRILRERLVRTQRKLHSGAFRLLSGRQRLTLASLAIVDFMS 446
           RL   +S   + + D  S I    + +   +  LH+ +   LS RQ L+++ L++ +  S
Sbjct: 40  RLSIKESEGSESDSDEESAISDEEQAVPFLKSALHTVS--ALSSRQLLSISMLSLANLCS 97

Query: 447 FCSMSVMAPFFP 482
             + S +APF+P
Sbjct: 98  TIAFSCIAPFYP 109


>U67949-8|AAD32274.1|  626|Caenorhabditis elegans Hypothetical
           protein F55A4.8a protein.
          Length = 626

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = +3

Query: 267 RLRRTQSWSGDPNDDVSSEIRILRERLVRTQRKLHSGAFRLLSGRQRLTLASLAIVDFMS 446
           RL   +S   + + D  S I    + +   +  LH+ +   LS RQ L+++ L++ +  S
Sbjct: 180 RLSIKESEGSESDSDEESAISDEEQAVPFLKSALHTVS--ALSSRQLLSISMLSLANLCS 237

Query: 447 FCSMSVMAPFFP 482
             + S +APF+P
Sbjct: 238 TIAFSCIAPFYP 249


>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
           protein R10E11.1b protein.
          Length = 2056

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -3

Query: 289 HDCVRR---NRPEFGGNLPPPHVSAKSPACVDVLLILLSKTS 173
           H C +R   NR     N PPPH +   P C  +  +L   TS
Sbjct: 417 HKCSQREKENRDFAAKNQPPPHAACTLPHCSTMKEVLTHMTS 458


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
           protein R10E11.1a protein.
          Length = 2045

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -3

Query: 289 HDCVRR---NRPEFGGNLPPPHVSAKSPACVDVLLILLSKTS 173
           H C +R   NR     N PPPH +   P C  +  +L   TS
Sbjct: 417 HKCSQREKENRDFAAKNQPPPHAACTLPHCSTMKEVLTHMTS 458


>AB009362-1|BAA23766.1|  118|Caenorhabditis elegans protein (
           Caenorhabditis elegansmRNA, partial cds. ).
          Length = 118

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -3

Query: 289 HDCVRR---NRPEFGGNLPPPHVSAKSPACVDVLLILLSKTS 173
           H C +R   NR     N PPPH +   P C  +  +L   TS
Sbjct: 21  HKCSQREKENRDFAAKNQPPPHAACTLPHCSTMKEVLTHMTS 62


>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase
           2 protein.
          Length = 1668

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = -1

Query: 426 RVKPRLNAVGRSAAGMRLNVAFFVCAPIFLSIFGFPS*HHRSGLPTMIV-FVAIAPSLVG 250
           R+ P L+AV    A    N   FV  P  LS+       ++S L  +I+ F AIA    G
Sbjct: 236 RIFPDLDAV---TAAQLTNAMCFV--PAILSVISRKP--NKSALLLVIIDFAAIAAQSSG 288

Query: 249 TFLRPMSPPNLQHALM 202
            +  PM  PNLQ  L+
Sbjct: 289 FWALPMFLPNLQKHLV 304


>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
           protein 2 protein.
          Length = 1668

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = -1

Query: 426 RVKPRLNAVGRSAAGMRLNVAFFVCAPIFLSIFGFPS*HHRSGLPTMIV-FVAIAPSLVG 250
           R+ P L+AV    A    N   FV  P  LS+       ++S L  +I+ F AIA    G
Sbjct: 236 RIFPDLDAV---TAAQLTNAMCFV--PAILSVISRKP--NKSALLLVIIDFAAIAAQSSG 288

Query: 249 TFLRPMSPPNLQHALM 202
            +  PM  PNLQ  L+
Sbjct: 289 FWALPMFLPNLQKHLV 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,142,597
Number of Sequences: 27780
Number of extensions: 228316
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)