Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1861
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.42 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   3.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   5.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   6.9  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 200 NINACWRFGGDMGRRKVPTKLGAIATNTIMVGR 298
           N+N   R   +   +  PT LGA+AT  + V R
Sbjct: 124 NVNNAARINWEYLDKYKPTPLGAVATEKMFVAR 156


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 348 VRTQRKLHSGAFRLLSGRQRLTLASLAIV 434
           VRT  K  +G   L++GR+R+  A   ++
Sbjct: 290 VRTLNKRATGVNVLINGRRRIIFARREVI 318


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 292  DHDCVRRNRPE 260
            DHDC+R+ R +
Sbjct: 1647 DHDCIRQERTQ 1657


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +3

Query: 267 RLRRTQSWSGDPNDDVSSEIRIL 335
           ++RR +  + DP+D+ + + R+L
Sbjct: 175 QIRRNERRTPDPHDETAKKPRVL 197


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 244 EGSHQTRGDCDEHNHGR 294
           +GS+   G+  +HN GR
Sbjct: 263 DGSNMVEGNESDHNDGR 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,907
Number of Sequences: 438
Number of extensions: 3006
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)