Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1860
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0639 - 25730092-25730224,25730867-25731045                       30   1.7  
01_06_0552 + 30166699-30166797,30167094-30167562,30171536-301718...    30   1.7  
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411           29   3.9  
08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907     28   6.9  
04_04_1169 - 31446291-31446395,31446789-31446918,31447047-314471...    28   6.9  
12_02_0954 - 24757417-24758214                                         28   9.1  
03_06_0720 + 35739383-35739391,35739802-35740275,35740695-357411...    28   9.1  

>11_06_0639 - 25730092-25730224,25730867-25731045
          Length = 103

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 403 PRWWLGRSNKTRPSTQASRLYW 468
           PRWW G+  +++ +T A R +W
Sbjct: 59  PRWWWGQGARSQEATMARRWWW 80


>01_06_0552 +
           30166699-30166797,30167094-30167562,30171536-30171879,
           30172006-30172302
          Length = 402

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 462 QPRRLRGRPRLVASAEPPTRRSSDSEGEDI 373
           +PR+ RGRPR  A++    R   DS G+++
Sbjct: 136 RPRKKRGRPRTAAASRDAARPKKDSVGKEM 165


>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
          Length = 885

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 369 PLYPPPPSH*NASLVARQKQQDAAVHAGVEAVLEP 473
           PL P   +H  A L AR  ++   VHA    +LEP
Sbjct: 148 PLSPAARNHHGADLPARSPRRSRLVHAAATKLLEP 182


>08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907
          Length = 794

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 399 NASLVARQKQQDAAVHAGVEAVLEPRPDRFDYDTASNEKHEIS 527
           NAS+++ ++ +   +H G   V E + ++ D++    +KH IS
Sbjct: 637 NASILSEERGEQVKLHHGAHQVEENQNEQKDWNKGGIKKHFIS 679


>04_04_1169 -
           31446291-31446395,31446789-31446918,31447047-31447126,
           31447396-31447474,31448178-31448315,31448386-31448522
          Length = 222

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +2

Query: 683 LGNWDQVTDFYRIATSYH 736
           LG W++V+DFYR A+ ++
Sbjct: 11  LGRWNEVSDFYRRASEFY 28


>12_02_0954 - 24757417-24758214
          Length = 265

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 366 VPLYPPPPSH*NASLVARQKQQDAAV 443
           VPL PPPP       V +Q+QQ+A V
Sbjct: 10  VPLLPPPPPPPRVVGVQQQQQQEAVV 35


>03_06_0720 +
           35739383-35739391,35739802-35740275,35740695-35741122,
           35741273-35741351
          Length = 329

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +3

Query: 369 PLYPPPPSH*NASLVARQKQQDAAVHAGVEAVLEPRPDRFDYDTASNEKHEISLKSAN 542
           PL PPPPS  N S  A Q+QQ     AG               T+ + + E+S+ +A+
Sbjct: 213 PLSPPPPSSSNPSERAWQQQQQPQ-RAGKSPAAASDAMDAARTTSCSSRDEVSISNAS 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,584,088
Number of Sequences: 37544
Number of extensions: 331267
Number of successful extensions: 968
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)