Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1860
         (750 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF363689-1|AAK73515.1| 1608|Homo sapiens capicua protein protein.      30   7.7  
AC006486-3|AAD11988.1| 1453|Homo sapiens BC85722_1 protein.            30   7.7  
AB002304-1|BAA20765.1| 1451|Homo sapiens KIAA0306 protein.             30   7.7  

>AF363689-1|AAK73515.1| 1608|Homo sapiens capicua protein protein.
          Length = 1608

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -1

Query: 573  SPTTYEVTDLNSQILGKFHASHLKPYRNQTGQVSAPVQPR--RLRGRPRLVASAEPPTRR 400
            SPT   +      ILG    S+ K  +N T   SAP  P   + + R R   S+EP T +
Sbjct: 1373 SPTLQSLATSPRAILG----SYRKKRKNSTDLDSAPEDPTSPKRKMRRRSSCSSEPNTPK 1428

Query: 399  SSDSEGEDIT 370
            S+  EG+  T
Sbjct: 1429 SAKCEGDIFT 1438


>AC006486-3|AAD11988.1| 1453|Homo sapiens BC85722_1 protein.
          Length = 1453

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -1

Query: 573  SPTTYEVTDLNSQILGKFHASHLKPYRNQTGQVSAPVQPR--RLRGRPRLVASAEPPTRR 400
            SPT   +      ILG    S+ K  +N T   SAP  P   + + R R   S+EP T +
Sbjct: 1218 SPTLQSLATSPRAILG----SYRKKRKNSTDLDSAPEDPTSPKRKMRRRSSCSSEPNTPK 1273

Query: 399  SSDSEGEDIT 370
            S+  EG+  T
Sbjct: 1274 SAKCEGDIFT 1283


>AB002304-1|BAA20765.1| 1451|Homo sapiens KIAA0306 protein.
          Length = 1451

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -1

Query: 573  SPTTYEVTDLNSQILGKFHASHLKPYRNQTGQVSAPVQPR--RLRGRPRLVASAEPPTRR 400
            SPT   +      ILG    S+ K  +N T   SAP  P   + + R R   S+EP T +
Sbjct: 1216 SPTLQSLATSPRAILG----SYRKKRKNSTDLDSAPEDPTSPKRKMRRRSSCSSEPNTPK 1271

Query: 399  SSDSEGEDIT 370
            S+  EG+  T
Sbjct: 1272 SAKCEGDIFT 1281


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,008,141
Number of Sequences: 237096
Number of extensions: 1820230
Number of successful extensions: 3982
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3978
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)