Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1853
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ... 29 0.50
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 29 0.87
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 27 2.0
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 27 2.6
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 27 3.5
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce... 26 4.6
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 26 6.1
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 26 6.1
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo... 25 8.1
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr... 25 8.1
>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 29.5 bits (63), Expect = 0.50
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 39 VTIGFFNAYGLANQRDQVSDFLRDHQIDIFL 131
V IGF + +GL+ Q + +D L +H++ I+L
Sbjct: 43 VLIGFMDVFGLSKQIKEGADQLANHELAIYL 73
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 28.7 bits (61), Expect = 0.87
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 357 LPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNG 488
L P+K+ +E + G IL D + WNS T TP G
Sbjct: 212 LEPNKLDEGMFLEGIGAGGIGRILIADFGFSKVVWNSKTATPCG 255
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +3
Query: 414 SSVILAGDLNCKHIRWNSHTTTPN--GRRLDALVDNLAFDIVAPLTPTHYPLNIAHRPDI 587
S ++LAG C +I W T+P+ + +++ NL F + H ++ R +
Sbjct: 661 SEILLAGIWLCINILWPKQCTSPSQEDKERASILQNLGFGECLQMLQNHSSPDVRER--V 718
Query: 588 LDIALLKNVT 617
D + NVT
Sbjct: 719 KDALMYINVT 728
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 252 LHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLS 383
L CV P++ E +C+ + TGH +++ P K ++S
Sbjct: 487 LQCVSNVAPSMYK-EGGICKQTFTGHKDFILSVTVSPDGKWIIS 529
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +3
Query: 36 SVTIGFFNAYGLANQRDQVSDFLRDHQIDIFLVQETLLKP 155
SV G YG + +FL+ H ID FLV LKP
Sbjct: 199 SVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASLKP 238
>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 4.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 39 VTIGFFNAYGLANQRDQVSDFLRDHQIDIFLVQETLLKP---ARRDPKIANYNMVRNDRL 209
V IGF + +GL++Q + +D L D ++L KP PK + ND
Sbjct: 44 VLIGFMDIFGLSDQIKEGADKLADDGFTVYLPDFLEGKPLPVTALPPKTPEDQKLCNDFF 103
Query: 210 SAR 218
S R
Sbjct: 104 STR 106
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 229 PSFTIEEPCIASHSILPRSLISKHQ 303
PSFT++E C + H P + +K Q
Sbjct: 201 PSFTVKEKCPSGHPPWPAGICTKCQ 225
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +3
Query: 312 ISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGR 491
I L H P +SV + D I+ S + +++L SV D + RW P
Sbjct: 52 IELVYH-PERTSSVIMRTDIILDSQEDDSILNKQKSVFENLDERYQISRWIDRRIIPRNT 110
Query: 492 RLDALVD 512
LDA +D
Sbjct: 111 NLDATMD 117
>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
Srk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +3
Query: 363 PDKIVLSSDIEALLGMGSSVI---LAGDLNCKHIRWNSHTTTPNG 488
PDK+ + E + G+G+ I D + W+SHT TP G
Sbjct: 284 PDKV---DEGEFIPGVGAGTIGRIRLADFGLSKVVWDSHTQTPCG 325
>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +3
Query: 102 LRDHQIDIFLVQETLLKPARRDPKIANYNM 191
L+ H + +FL+ TL++ +++ + NYN+
Sbjct: 240 LKPHDM-VFLISNTLVEANKQETALTNYNL 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,654
Number of Sequences: 5004
Number of extensions: 52226
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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