Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1853
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519...    31   0.90 
12_01_0378 - 2946916-2947590                                           30   1.6  
03_06_0361 + 33377781-33378458                                         28   6.4  
03_06_0156 + 32035503-32035769,32036436-32036539,32036734-320368...    28   6.4  

>09_03_0058 +
           11950668-11950701,11951068-11951106,11951586-11951982,
           11952016-11952314,11953743-11956795
          Length = 1273

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +3

Query: 312 ISLTGHAPIV-IASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNG 488
           I L+G   I+ ++  ++PP  +  ++ ++ALL  G   ++ G++    +R   H T    
Sbjct: 170 IELSGPLEILSLSGAFMPPPSLANATGLKALLAGGQGQVIGGNV-VGALRARGHVTI--- 225

Query: 489 RRLDALVDNLAFDIVAP 539
             L A+V N+ ++ ++P
Sbjct: 226 --LAAVVSNVTYECLSP 240


>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = +3

Query: 147 LKPARRDPKIANYNMV-RNDRLSARGGGTVIYYRRALHCVPLDPPALANIEASVCR---- 311
           ++ A    +++N  +V RN      G G V+YYR A++    +P   A +     R    
Sbjct: 39  IRAAVESAELSNLTVVVRNGTADGGGSGGVVYYRLAVNVTMYNPSGRAGVHYDAIRPRLL 98

Query: 312 ISLTGHAPIVIASVYLP 362
           + L G A +  A+  +P
Sbjct: 99  LLLAGGASLGAANATVP 115


>03_06_0361 + 33377781-33378458
          Length = 225

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 254 QGSSIVNDGATTTSREPVVPDHVIVRDFRVTARGLK 147
           Q   +V  G+T    +P +PD V+ + F+V A+ +K
Sbjct: 184 QMPGVVAAGSTLFGSDPEIPDAVLAKSFQVDAKIIK 219


>03_06_0156 +
           32035503-32035769,32036436-32036539,32036734-32036844,
           32036923-32037073,32037614-32037888,32037998-32038211
          Length = 373

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 51  FFNAYGLANQRDQVSDFLRDHQIDIFLVQETLLKPARRDPKIANYNMVRN 200
           +F A+ LAN RDQ+   +     D +L   +  K A  +  I NYN  +N
Sbjct: 293 WFRAFSLANPRDQIRLAITLALYDNYLKLPSNWKRADANSDILNYNGPKN 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,876,586
Number of Sequences: 37544
Number of extensions: 397224
Number of successful extensions: 1059
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)