Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1853
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    41   8e-04
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    39   0.004
AF016445-6|AAC69053.1|  250|Caenorhabditis elegans Hypothetical ...    32   0.35 
Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical p...    31   0.61 
AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical ...    29   3.3  
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   5.7  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   5.7  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    28   7.6  
AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine r...    28   7.6  

>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 58/248 (23%), Positives = 103/248 (41%), Gaps = 24/248 (9%)
 Frame = +3

Query: 15   ISRIKPLSVTIGFFNAYGLANQRDQVSDFLRDHQIDIFLVQETLLK---PAR--RDPKIA 179
            I +IK ++ ++          +   + +F     IDI L+ ET L    P+     P ++
Sbjct: 311  IHKIKNINFSLANVRGVSALPKIIMLKEFFASSDIDILLLTETFLSNIVPSSLFNAPNMS 370

Query: 180  NYNMVRNDRLSAR--GGGTVIYYRRALHCVPLDPPALANIEASVCRI----------SLT 323
               + RN  L ++  GGG  + ++ +L+    D     +     C I          + +
Sbjct: 371  FLRLDRNPELHSKVSGGGVAVMHKSSLNITLRDINFETHYPKHRCEILAFDIHNAEPASS 430

Query: 324  GHAPIVIASVYLPP-----DKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTT--P 482
              +P+ I  +Y PP     +   L + +E+ + + S  ILAGDLN   I W+S  ++  P
Sbjct: 431  ASSPLSIFLIYRPPCCSVSENAALIAHLESYIPL-SRTILAGDLNFPQINWSSANSSLHP 489

Query: 483  NGRRLDALVDNLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSD 662
                L ++  NL+  +  P   +      A   +ILD+         LH     + L+SD
Sbjct: 490  FASFLSSI--NLSQKVQFPTRLS------ASSSNILDLVACSADISILHLSPQPALLNSD 541

Query: 663  HRPVVMKL 686
            H  V  K+
Sbjct: 542  HLSVSFKI 549


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
 Frame = +3

Query: 342 IASVYLPP-----DKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSH-TTTPNGRRLDA 503
           I++VY+PP     +   L +D   +    S  I++GD+N  H  W+S  +    GR L  
Sbjct: 3   ISNVYVPPRSSSSNHARLMTDFSNIFQTKSKSIISGDVNAHHSAWHSEGSEDTRGRELAE 62

Query: 504 LVDNLAFDIVAPLTPTHYPLNI--AHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVV 677
           L+D L  D++      H   +      PDI       ++  + H    + +L SDH P+ 
Sbjct: 63  LID-LHPDLIIQNEQVHTRADTYSISSPDI--TICTADLATKCH-WSTLYKLGSDHIPMK 118

Query: 678 MKLGRAS 698
           +K+ +A+
Sbjct: 119 LKINQAA 125


>AF016445-6|AAC69053.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.10 protein.
          Length = 250

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +3

Query: 375 VLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDNLAFDIVAPLTPT- 551
           ++S  I + L    S ++ GDLNC     ++   TP       L+ + +  ++ P T T 
Sbjct: 4   LISMMIVSFLAPDVSAVIGGDLNCTQYNGSAFVWTPAAVACSNLISDASCAVLYPTTDTL 63

Query: 552 HYPL--NIAHRP 581
            YP   N A RP
Sbjct: 64  GYPAPGNAAGRP 75


>Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical
           protein T06C12.14 protein.
          Length = 245

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 372 IVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDNLAFDIV--APLT 545
           I L S I ALL   +S ++ GDLNC     ++   TP       ++ + +  ++  AP+ 
Sbjct: 2   IALVSFILALLAPQASAVIGGDLNCTSYNGSAFVWTPAATACSNVISDSSCAVLYPAPVP 61

Query: 546 PTHYP 560
              YP
Sbjct: 62  ADGYP 66


>AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.9 protein.
          Length = 250

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = +3

Query: 375 VLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDNLAFDIVAPLTPT- 551
           ++S  I + L    S ++ GDLNC     ++   TP        + + +  ++ P T T 
Sbjct: 4   LISMMIVSFLAPDVSAVIGGDLNCTTFNGSAFVWTPAAVACSNFISDASCAVLYPTTDTL 63

Query: 552 --HYPLNIAHRP 581
               P N A RP
Sbjct: 64  GFPAPGNAAGRP 75


>AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical
           protein T05B4.8 protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +3

Query: 339 VIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDNL 518
           V+ S+ L     ++S    +L    +S ++ GDLNC      +   TP+       + + 
Sbjct: 54  VVLSLLLNKMIALVSLFFVSLFAPEASAVIGGDLNCTTYNGTAFVWTPSAVACSNTISDA 113

Query: 519 AFDIVAPLTPT-HYPL--NIAHRP 581
           +  I+ P T T  +P   N A RP
Sbjct: 114 SCAILYPTTDTLGFPAAGNAAGRP 137


>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
           protein T19D12.4b protein.
          Length = 1015

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 3/131 (2%)
 Frame = +3

Query: 60  AYGLANQRDQVSDFLRDHQIDIFLV--QETLLKPARRDPKIANYNMVRNDRLSARGGGTV 233
           AY      +   D++  +  DI  +  Q + ++      +I  YN  +N + + +G  + 
Sbjct: 561 AYYAIEISEATDDYVVQNLQDILNIATQASTMQTGTESYQIVTYNDAQNTQFNPKGDASF 620

Query: 234 IYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDK-IVLSSDIEALLGM 410
             ++  +  +  DP  +A +   + R+ L      V A +     K I  SSDI    G 
Sbjct: 621 ASFKAFVQGLIADPKRIAAMRRGITRLDLA--IDDVTAEMKAQATKNIRFSSDI-LFFGQ 677

Query: 411 GSSVILAGDLN 443
            +  +L  D++
Sbjct: 678 ANDAVLKPDVD 688


>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
           protein T19D12.4a protein.
          Length = 1028

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 3/131 (2%)
 Frame = +3

Query: 60  AYGLANQRDQVSDFLRDHQIDIFLV--QETLLKPARRDPKIANYNMVRNDRLSARGGGTV 233
           AY      +   D++  +  DI  +  Q + ++      +I  YN  +N + + +G  + 
Sbjct: 574 AYYAIEISEATDDYVVQNLQDILNIATQASTMQTGTESYQIVTYNDAQNTQFNPKGDASF 633

Query: 234 IYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDK-IVLSSDIEALLGM 410
             ++  +  +  DP  +A +   + R+ L      V A +     K I  SSDI    G 
Sbjct: 634 ASFKAFVQGLIADPKRIAAMRRGITRLDLA--IDDVTAEMKAQATKNIRFSSDI-LFFGQ 690

Query: 411 GSSVILAGDLN 443
            +  +L  D++
Sbjct: 691 ANDAVLKPDVD 701


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 419   RAPHAEQRLDITA*NDLIRWKINGRDND 336
             R  + E   ++ A +D + WK+NG+D D
Sbjct: 13887 RGDNVEIEAELLAEDDTVTWKVNGKDAD 13914


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 419   RAPHAEQRLDITA*NDLIRWKINGRDND 336
             R  + E   ++ A +D + WK+NG+D D
Sbjct: 13887 RGDNVEIEAELLAEDDTVTWKVNGKDAD 13914


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 489  CHSGLWCVSST*CVYNLGRPPE*QSSPCRAAPRYHCLERSYP 364
            C  G  C+  T C+ + G  P    S C    RY+   RSYP
Sbjct: 1910 CIGGSSCLIGT-CLCDSGYEPSSDRSSCVLNDRYNVRSRSYP 1950


>AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine
           receptor, class h protein247 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 484 FGVVVCEFHLMCLQFRSPARMTEL 413
           F + VC F   C+ F++P RMT +
Sbjct: 26  FEIPVCTFGAYCILFKTPERMTSV 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,049,568
Number of Sequences: 27780
Number of extensions: 301556
Number of successful extensions: 759
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)