Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1851
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106579-8|AAC78201.1|  710|Caenorhabditis elegans Hypothetical ...    34   0.086
Z29095-5|CAA82350.1|  289|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AJ005867-1|CAA06744.1|  289|Caenorhabditis elegans Sqv-3 protein...    30   1.9  
Z81553-7|CAB04496.4|  797|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    27   9.9  

>AF106579-8|AAC78201.1|  710|Caenorhabditis elegans Hypothetical
           protein F54E2.5 protein.
          Length = 710

 Score = 34.3 bits (75), Expect = 0.086
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
 Frame = +1

Query: 16  AKRVHLKNKTR--VKKFIITLIT*VNVTSVLIIFFTENRVVEFIFHKLSAISSQLDRMER 189
           A+ + + N T   +K+F+ T+       +    FFT   + +F+  ++SA SSQ     +
Sbjct: 280 AQNIEITNVTAFLIKRFVNTMEILAGAATPTFFFFTSKEMRKFVSTRVSAASSQGASNLQ 339

Query: 190 ISEP-SFTIFFFSLAQFTEH*IVHL*CSTNTYISLIVFIVLISF 318
            SEP S T   F+   F     V   CS+  ++ LI+  ++  F
Sbjct: 340 FSEPTSSTWIVFTCHFFHCPNRVRDNCSSALFVILILIFMVRGF 383


>Z29095-5|CAA82350.1|  289|Caenorhabditis elegans Hypothetical
           protein R10E11.4 protein.
          Length = 289

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +1

Query: 58  FIITLIT*VNVTSVLIIFFTENRVVEFIFHKLSAISSQLDRMERISE 198
           F++ L+  + +T  L+  + + R ++  +HKL  I    DR+E + E
Sbjct: 22  FLVLLVLDLEITRDLMTDYVDPRPLQTSYHKLCVIVPYRDRLEELRE 68


>AJ005867-1|CAA06744.1|  289|Caenorhabditis elegans Sqv-3 protein
           protein.
          Length = 289

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +1

Query: 58  FIITLIT*VNVTSVLIIFFTENRVVEFIFHKLSAISSQLDRMERISE 198
           F++ L+  + +T  L+  + + R ++  +HKL  I    DR+E + E
Sbjct: 22  FLVLLVLDLEITRDLMTDYVDPRPLQTSYHKLCVIVPYRDRLEELRE 68


>Z81553-7|CAB04496.4|  797|Caenorhabditis elegans Hypothetical
           protein F56H6.7 protein.
          Length = 797

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 432 YGLQ*PLNTRWAVSSSTQQRNKTKWKKK*NGIFEPHFHRLED 557
           YG+Q        V +ST  +  T WKK  NG+ +  +H + D
Sbjct: 622 YGIQAAKKIIETVKASTDPKVLTTWKKFDNGLKQFAYHNITD 663


>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
           protein R11G1.1 protein.
          Length = 1656

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 335 MCVCMYLYIVTILETLELMSQGGWRI*VRGRCL 433
           + VC+YL +  I  + + +S    R+ V GRC+
Sbjct: 2   LTVCLYLVVFPIFASSQFLSYDAIRMRVPGRCM 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,932,869
Number of Sequences: 27780
Number of extensions: 301947
Number of successful extensions: 651
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)