Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1850
         (743 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3DH89 Cluster: Putative uncharacterized protein precur...    35   1.8  
UniRef50_P58145 Cluster: Ribosomal operon-associated A protein; ...    34   3.2  

>UniRef50_A3DH89 Cluster: Putative uncharacterized protein
           precursor; n=1; Clostridium thermocellum ATCC 27405|Rep:
           Putative uncharacterized protein precursor - Clostridium
           thermocellum (strain ATCC 27405 / DSM 1237)
          Length = 685

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = -3

Query: 465 NLTI*SKNDYLVIGPKIYHQFCIRVLSIIFLFYN*QLGIRFFFVNICTKFVTSTVRKRFF 286
           N+   SK D ++   K+      ++L++I LFY   L I FF V   +KF     +  F 
Sbjct: 33  NILALSKQDIMIFLAKLESDAVNKLLAMIPLFYGMTLFILFFLVYFASKFQLERRKHEFG 92

Query: 285 SYIFCG-TYVKGLFQLRADGWVSS 217
            Y+  G    K  F L A+ + SS
Sbjct: 93  IYLMLGMRRSKLFFMLLAEDFRSS 116


>UniRef50_P58145 Cluster: Ribosomal operon-associated A protein;
           n=1; Euglena longa|Rep: Ribosomal operon-associated A
           protein - Astasia longa (Euglenophycean alga)
          Length = 519

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
 Frame = -2

Query: 667 TFQFNLRLITRALYQKIIK-INFPIIYLQTR-----FNIFIGGFRVFKNVGY*L*CKMQI 506
           +F+FN  L  +  +  ++K + +P + L+T      FN +   + +F N    L      
Sbjct: 112 SFKFNFFLFYKFCFNNLVKFVMYPFLELKTENFVFNFNFYTNLYDIFLNFKKILLKNFMK 171

Query: 505 LKYEM*QKAVISN*LNYLKQK*LFSNRS*NIPPILYKSSLNNFL 374
           L Y        +N  NY+ +K L+ N + NI  + Y   LNNF+
Sbjct: 172 LYYFTIN---FNNKFNYMNKKWLYKNLTFNINFLKYFLKLNNFI 212


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,683,349
Number of Sequences: 1657284
Number of extensions: 12596110
Number of successful extensions: 24190
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24183
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)