Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1850
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    27   3.7  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   4.9  
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.5  

>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -2

Query: 670 TTFQFNLRLITRALYQKIIKI--NFPIIYLQTRFNIFIGGFRV 548
           T F++ L      LYQKII++  +  +I +   F++FI  FR+
Sbjct: 348 TVFEYVLEHTLPHLYQKIIELDMDLKLITINWFFSLFIKDFRL 390


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 551 TKTANENIKTRL*IYNWEIYFYYFLIQCSRY*SKVKLKRGLCFSIILVVFTS 706
           T    +N+   + +  + IYF        R+ S+   + GL FSI +V F+S
Sbjct: 541 TDKVADNVVATVCVCGFNIYFPLMSPWIQRFRSRCCFRLGLLFSIFVVGFSS 592


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 395 LIQNWWYILGPITK*SFLL*IVKLVRNHGFLLHLVFQDLHFTL 523
           LIQ WW +LG +    F L   ++     F++ +++ +L+ TL
Sbjct: 46  LIQTWWVLLG-LLPIFFALEHYEVPYKWIFIIEMLYYELYLTL 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,709
Number of Sequences: 5004
Number of extensions: 59346
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)