Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1850
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0273 + 2115257-2115589,2115706-2115766,2115876-2115970,211...    28   6.8  

>05_01_0273 +
           2115257-2115589,2115706-2115766,2115876-2115970,
           2116072-2116184,2116278-2116551,2116923-2117036,
           2117169-2117233,2117325-2117466,2117547-2117666,
           2118153-2118241,2118349-2118433
          Length = 496

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 653 PSINNESTVSKNNKNKFPNYIFTDA 579
           PS N ESTVS +  +K PN  FT A
Sbjct: 405 PSPNGESTVSCHQISKMPNLAFTIA 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,587,617
Number of Sequences: 37544
Number of extensions: 293417
Number of successful extensions: 419
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)