Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1850
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.99 
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               24   1.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.3  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   5.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   5.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 318 ISYRYLQRKTLSLVVNYKIRKLLRELLYKIG 410
           ++ R L  K +S V+NY + K + E +++IG
Sbjct: 510 VAARGLDIKNVSHVINYDLPKGIDEYVHRIG 540


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 420 KIYHQFCIRVLSIIFLFY 367
           K YH F I V+++IFL++
Sbjct: 3   KNYHFFFILVITLIFLYF 20


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 236 ARSWNSPLT*VPQNI*EKKRFLTVD 310
           A+SW      +P+N+ E  R L VD
Sbjct: 58  AQSWRDSRLRLPENMSEDYRILDVD 82


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 543 LNTRKPPMKILKRVC 587
           +N++K  M+ILK VC
Sbjct: 23  INSKKTIMRILKEVC 37


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 543 LNTRKPPMKILKRVC 587
           +N++K  M+ILK VC
Sbjct: 6   INSKKTIMRILKEVC 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,657
Number of Sequences: 438
Number of extensions: 4584
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)