Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1849
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    28   0.28 
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    27   0.84 
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   1.5  
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    24   4.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   5.9  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    24   5.9  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    24   5.9  

>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 28.3 bits (60), Expect = 0.28
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 193 PELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKGDRSDP 71
           PE+  ++ R+++    A +VP  W+   V+PI K G  + P
Sbjct: 58  PEIAQSVERIFK----AAKVPIEWERVKVYPILKNGTTTIP 94


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 0.84
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 187 LTPALTRLYRLSYCANRVPSSWKTA-HVHPIPKKGDRSDPSSYRPIAIT 44
           L  +LTR+  L +  +   +  K   +V   PKKG   DPS+  P  +T
Sbjct: 14  LRVSLTRVAHLVFANSHESNDLKMVENVSSTPKKGVLEDPSTLTPEVVT 62


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -2

Query: 211 VLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKGDRSDPSSYRPI 53
           VLK  + +++PA T  YR +  +++VP   K   +    K+G  S  S Y  +
Sbjct: 256 VLKKPSRKMSPAYTSSYRQNSPSSQVPPVSKKHVIIYENKEGSSSSESVYEDV 308


>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 96  GIGWTWAVFHEDGTL 140
           G GW W +  +DG+L
Sbjct: 146 GSGWAWLIVDKDGSL 160


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 144  LTGFRLHGRLPTSTLS 97
            LTG  +HG++PT  +S
Sbjct: 1581 LTGIMMHGKIPTLKIS 1596


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 242 LMDVQESEFPPDCT 283
           L D+QESEF PD T
Sbjct: 54  LSDLQESEFKPDGT 67


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 303 RRSALHSVQSGGNSDSWTSISRAGQTASL 217
           R S+ HS  S  N  + ++++ AG+T SL
Sbjct: 522 RPSSSHSTLSYANDSASSAVNVAGETGSL 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,349,693
Number of Sequences: 5004
Number of extensions: 24815
Number of successful extensions: 50
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)