Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1849
(308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 38 0.002
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 34 0.020
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458... 32 0.080
03_05_0163 - 21424010-21424057,21424310-21424417,21424557-214246... 29 0.74
04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683... 28 1.3
11_08_0019 + 27697918-27698609,27701107-27701372,27701778-277019... 28 1.7
07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323 28 1.7
03_06_0722 - 35751490-35754357 27 2.3
10_02_0119 + 5488469-5488647,5489030-5489195 27 3.0
08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999 27 3.0
03_06_0037 + 31222963-31223886,31225172-31225786 26 6.9
02_05_0847 + 32183249-32183486,32184001-32184118,32184231-321843... 25 9.2
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = -2
Query: 244 KSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKGDRSDPSS 65
KS GPDG PA + L + R + + +P + IPKK D
Sbjct: 907 KSPGPDGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPIDLKD 966
Query: 64 YRPIAITSLLSKVMERII 11
YRPI++ +++ KV+ + +
Sbjct: 967 YRPISLCNVVYKVVSKCL 984
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 34.3 bits (75), Expect = 0.020
Identities = 17/85 (20%), Positives = 38/85 (44%)
Frame = -2
Query: 265 LRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKG 86
+ ++ K+ GPDG +K C + RL + N ++ + +PKK
Sbjct: 321 MSIIPADKAPGPDGFNGFFMKKCWHIIAQDYYRLVAHFHAGNVDLEILNSSFITLVPKKT 380
Query: 85 DRSDPSSYRPIAITSLLSKVMERII 11
+ +RPI++ + K++ +++
Sbjct: 381 SLETVNDFRPISLMGISLKIVTKLL 405
>11_04_0144 +
14044973-14044984,14045050-14045183,14045329-14045824,
14046097-14046117,14047504-14047767,14048635-14048715
Length = 335
Score = 32.3 bits (70), Expect = 0.080
Identities = 18/85 (21%), Positives = 36/85 (42%)
Frame = -2
Query: 265 LRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKG 86
++++ K+ PDGI LK C P ++ L + + + +PKK
Sbjct: 231 IKVIQPDKAPSPDGINGYFLKKCWPIISQEFYWLAAHFHACYTDLQPINKSFITLVPKKS 290
Query: 85 DRSDPSSYRPIAITSLLSKVMERII 11
+ YRPI++ + K+ ++
Sbjct: 291 SPETVNDYRPISLMGISLKLPVSVV 315
>03_05_0163 -
21424010-21424057,21424310-21424417,21424557-21424643,
21425245-21425364,21425467-21425565,21426409-21426522,
21427041-21427094,21427202-21427296,21427650-21427785,
21428036-21428292,21428852-21429575
Length = 613
Score = 29.1 bits (62), Expect = 0.74
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = +1
Query: 169 ALAQASAQGRTFSEPLQGCRLARSTYGRPGV 261
ALA AS RT P CRL R +G PGV
Sbjct: 411 ALAIASLLKRTLVMPPLWCRLDRMWFGHPGV 441
>04_01_0519 +
6831912-6831978,6832333-6832488,6832748-6833098,
6833481-6833662,6833756-6834004,6834182-6834406,
6837492-6837791,6838642-6839215,6839959-6840059
Length = 734
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = -2
Query: 265 LRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPSSWK--TAHVHPIPK 92
+ ++ K+ GPDG +K C + YRL+ + + WK ++++ + K
Sbjct: 416 ISIVPADKALGPDGFNGFFMKKCWHIIA---QDYYRLASHFHAGCTIWKSCSSYITLVSK 472
Query: 91 KGDRSDPSSYRPIAITSLLSKVMERI 14
K + Y PI++ L K + ++
Sbjct: 473 KNSPETVNDYGPISLMGLSLKFLTKL 498
>11_08_0019 +
27697918-27698609,27701107-27701372,27701778-27701948,
27702187-27703166,27703723-27703804,27704148-27704170
Length = 737
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2
Query: 253 DVHKSSGPDGIPAVVLKTCAPELTPALTRL 164
DV K++ PDG P L C ELTP L+ L
Sbjct: 171 DVQKAA-PDGSPCSGLGCCQTELTPELSFL 199
>07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323
Length = 340
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 203 FQNHCRDAVWPARLMDVQESEFP 271
F N+C + VWPA L FP
Sbjct: 98 FHNNCPETVWPAALSSAGRPPFP 120
>03_06_0722 - 35751490-35754357
Length = 955
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -2
Query: 220 PAVVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKGD-RSDPSSYRPIAIT 44
PA ++ A +PA L+RL+ +R+ SS A P PK + +S Y P +
Sbjct: 74 PAATVRQ-ARTASPAAATLHRLTPARDRLKSSTAVAAAVPAPKPSNFQSHAGEYTPERLR 132
Query: 43 SL 38
L
Sbjct: 133 EL 134
>10_02_0119 + 5488469-5488647,5489030-5489195
Length = 114
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 2 LYINYSLHHLGKQGSYRDRPVARWVRPVTLLGDRVDVG 115
L +++ L H G + YRD P AR + LGD V+ G
Sbjct: 48 LNMDHELGHYGPRDRYRDPPSARRIEE---LGDSVEHG 82
>08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999
Length = 698
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -2
Query: 250 VHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPS 128
+H+ PD +P + C P +L +L+ Y +++PS
Sbjct: 412 LHRQDDPDHLPMSLESWCPPSDNCSLRKLHITHYYISKLPS 452
>03_06_0037 + 31222963-31223886,31225172-31225786
Length = 512
Score = 25.8 bits (54), Expect = 6.9
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -2
Query: 307 LPEICFTQCAVRRELRLLDVHKSSGPDGIPAVVLKTC--APELTPALTRLYRLSYCANRV 134
+P I + QC VR LRL + P IP C P T L +Y +R
Sbjct: 358 VPRITYLQCIVRETLRLY----PAAPMLIPHESSADCEVGGYSVPRGTMLLVNAYAIHRD 413
Query: 133 PSSWK 119
P++W+
Sbjct: 414 PAAWE 418
>02_05_0847 +
32183249-32183486,32184001-32184118,32184231-32184376,
32184591-32186080
Length = 663
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 178 ALTRLYRLSYCANRVPSSWKT 116
AL +Y LSYC S+W T
Sbjct: 565 ALAEIYLLSYCDKIAMSAWST 585
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,002,720
Number of Sequences: 37544
Number of extensions: 205613
Number of successful extensions: 632
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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