Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1849
(308 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 56 7e-09
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 56 7e-09
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 55 9e-09
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 54 2e-08
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 45 1e-05
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 36 0.004
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 31 0.16
Z69793-7|CAA93676.3| 527|Caenorhabditis elegans Hypothetical pr... 27 2.0
Z69791-7|CAA93663.3| 527|Caenorhabditis elegans Hypothetical pr... 27 2.0
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ... 27 2.7
Z82093-6|CAB05014.1| 256|Caenorhabditis elegans Hypothetical pr... 27 3.5
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 27 3.5
U41014-1|AAK32947.3| 641|Caenorhabditis elegans Hypothetical pr... 27 3.5
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 26 4.7
AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical... 26 6.2
AF003385-6|AAB54246.1| 354|Caenorhabditis elegans Hypothetical ... 26 6.2
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 25 8.1
AC024838-7|AAF60820.1| 381|Caenorhabditis elegans Hypothetical ... 25 8.1
AC024838-3|AAF60821.1| 381|Caenorhabditis elegans Hypothetical ... 25 8.1
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 55.6 bits (128), Expect = 7e-09
Identities = 30/89 (33%), Positives = 45/89 (50%)
Frame = -2
Query: 277 VRRELRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPI 98
+R LR K++G D I A LK+C + +T + + VP WKT+ I
Sbjct: 552 IRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLI 611
Query: 97 PKKGDRSDPSSYRPIAITSLLSKVMERII 11
KKGDR + +YRPI + +L KV + +
Sbjct: 612 FKKGDRENLENYRPICLLPVLYKVFTKCL 640
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 55.6 bits (128), Expect = 7e-09
Identities = 30/89 (33%), Positives = 45/89 (50%)
Frame = -2
Query: 277 VRRELRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPI 98
+R LR K++G D I A LK+C + +T + + VP WKT+ I
Sbjct: 291 IRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLI 350
Query: 97 PKKGDRSDPSSYRPIAITSLLSKVMERII 11
KKGDR + +YRPI + +L KV + +
Sbjct: 351 FKKGDRENLENYRPICLLPVLYKVFTKCL 379
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 55.2 bits (127), Expect = 9e-09
Identities = 30/89 (33%), Positives = 45/89 (50%)
Frame = -2
Query: 277 VRRELRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPI 98
+R LR K++G D I A LK+C + +T + + VP WKT+ I
Sbjct: 381 IRYALRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLI 440
Query: 97 PKKGDRSDPSSYRPIAITSLLSKVMERII 11
KKGDR + +YRPI + +L KV + +
Sbjct: 441 FKKGDRENLENYRPICLLPVLYKVFTKCL 469
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 54.4 bits (125), Expect = 2e-08
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = -2
Query: 235 GPDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPK-KGDRSDPSSYR 59
GPDGI + ++ L LY +S N +P WK A+V IPK K D + SSYR
Sbjct: 347 GPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKANVIMIPKPKKDPAIASSYR 406
Query: 58 PIAITSLLSKVMERII 11
PI++ S ++K++E+ I
Sbjct: 407 PISLLSPIAKLLEKAI 422
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = -2
Query: 214 VVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKG 86
+VLK CA L L+ +Y+ S+ +++P WK A + PIPKKG
Sbjct: 796 LVLKKCATPLAFPLSIIYKQSFADSKIPDCWKKAIIIPIPKKG 838
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 36.3 bits (80), Expect = 0.004
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = -2
Query: 307 LPEICFTQCAVRRELRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPS 128
LP F + +R + K++G D I A LK+C + +T + + +P
Sbjct: 393 LPPFLFGE--IRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRFNRYLESGNIPK 450
Query: 127 SWKTAHVHPIPKKGD 83
WKT+ I KKGD
Sbjct: 451 DWKTSKTTLIFKKGD 465
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 31.1 bits (67), Expect = 0.16
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = -2
Query: 214 VVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKGDR--SDPSSYRPIAITS 41
+VL CA L L+R+ R + P SW V P P K DP +Y
Sbjct: 784 LVLNNCANSLAAPLSRILRNIFETEDYPESWNHCIVIPDPPKIRELIRDPKNYALNYYFD 843
Query: 40 LLSKVMERII 11
VME++I
Sbjct: 844 PFLGVMEKVI 853
>Z69793-7|CAA93676.3| 527|Caenorhabditis elegans Hypothetical
protein F39D8.4 protein.
Length = 527
Score = 27.5 bits (58), Expect = 2.0
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = -2
Query: 253 DVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKGDRSD 74
D++K + P T APE T + + + A P S K I KGDR D
Sbjct: 369 DIYKINMLYNCPTFTATTLAPENTKRVKSITKKVTSATGSPLSKKGEIGSSIGDKGDRGD 428
Query: 73 PSSYRP-IAITSLLSKVMER 17
S I+I S L K +R
Sbjct: 429 NSVLSSLISIHSGLGKCEDR 448
>Z69791-7|CAA93663.3| 527|Caenorhabditis elegans Hypothetical
protein F39D8.4 protein.
Length = 527
Score = 27.5 bits (58), Expect = 2.0
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = -2
Query: 253 DVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKGDRSD 74
D++K + P T APE T + + + A P S K I KGDR D
Sbjct: 369 DIYKINMLYNCPTFTATTLAPENTKRVKSITKKVTSATGSPLSKKGEIGSSIGDKGDRGD 428
Query: 73 PSSYRP-IAITSLLSKVMER 17
S I+I S L K +R
Sbjct: 429 NSVLSSLISIHSGLGKCEDR 448
>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
protein Y46G5A.6 protein.
Length = 1002
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 289 TQCAVRRELRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRL 155
T C V REL+ ++ S PD + +V T P +P T++ RL
Sbjct: 138 TDCNVERELKSIEECMKSLPD-VQRIVEITEEPHESPPKTKITRL 181
>Z82093-6|CAB05014.1| 256|Caenorhabditis elegans Hypothetical
protein ZK39.7 protein.
Length = 256
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -3
Query: 306 CRRSALHSVQSGGNSDSWTSISRAGQTASLQW 211
CR SAL + NS WT S G TA L W
Sbjct: 131 CRNSALSTSCGSLNSFQWTDGSTTG-TAGLVW 161
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 113 PRPPYPQEG*PVGP 72
PRPPYP G PV P
Sbjct: 807 PRPPYPYPGGPVPP 820
>U41014-1|AAK32947.3| 641|Caenorhabditis elegans Hypothetical
protein C06G1.4 protein.
Length = 641
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 279 QSGGNSDSWTSISRAGQTASLQWF 208
QSGG S+ W S G S+Q F
Sbjct: 311 QSGGGSNMWNSTGNNGSGGSMQQF 334
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 217 AVVLKTCAPELTPALTRLYRLSYCANRVP 131
AV L EL +TR + SY ANR P
Sbjct: 1724 AVDLNNTVDELEEIITRNFERSYSANRAP 1752
>AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical
protein Y116A8C.16c protein.
Length = 982
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -2
Query: 235 GPDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPK 92
GP G+PA L+ P++ + +L+ + P ++TA + +P+
Sbjct: 252 GPAGMPAPELEAYHPDIAQSPPTSAKLAAPSKSSPFPYETAKISVVPE 299
>AF003385-6|AAB54246.1| 354|Caenorhabditis elegans Hypothetical
protein R08F11.4 protein.
Length = 354
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 298 ICFTQC--AVRRELRLLDVHKSSGPDGIPAV 212
I F C +R +L LL+VH+ PDG+ AV
Sbjct: 241 ILFGSCHDQMRPDLCLLEVHRVVKPDGLVAV 271
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +1
Query: 22 PSPWKARKLSR*ACSSMGPTGHPSWG*GGRG 114
PSPW R S G G P WG GG G
Sbjct: 25 PSPWGFRP-SPFFGGRSGGWGRPGWGGGGPG 54
>AC024838-7|AAF60820.1| 381|Caenorhabditis elegans Hypothetical
protein Y59E9AL.2 protein.
Length = 381
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 122 EDCPRPPYPQEG*PVGPIELQAYRDNFLAF-QGD 24
E+CP+PP P P GP + D ++ +GD
Sbjct: 179 ENCPKPPPPPPIPPPGPPPPRVIHDEWIDIREGD 212
>AC024838-3|AAF60821.1| 381|Caenorhabditis elegans Hypothetical
protein Y59E9AL.3 protein.
Length = 381
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 122 EDCPRPPYPQEG*PVGPIELQAYRDNFLAF-QGD 24
E+CP+PP P P GP + D ++ +GD
Sbjct: 179 ENCPKPPPPPPIPPPGPPPPRVIHDEWIDIREGD 212
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,721,311
Number of Sequences: 27780
Number of extensions: 148603
Number of successful extensions: 343
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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