Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1849
         (308 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   1.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   1.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.5  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    20   5.9  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    20   5.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 159  RYKRVSAGVSSGAHVFRTTAGMPS 230
            R+ R   G SSGA    + A MP+
Sbjct: 1033 RFLRAKPGKSSGAAAMASAAPMPA 1056


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 23  HHLGKQGSYRDRPVARW 73
           HH G  GS +D P  R+
Sbjct: 64  HHYGAAGSQQDMPYPRF 80


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 82  GHPSWG*GGRGQSSMKTEPC*RNKRGDTN 168
           GH   G  GRG +  +T    +NK GD N
Sbjct: 85  GHGKGGSRGRGGNRGRTGFNNKNKDGDDN 113


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 281 CSQAGTPTP 255
           CS AG PTP
Sbjct: 443 CSAAGNPTP 451


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 281 CSQAGTPTP 255
           CS AG PTP
Sbjct: 443 CSAAGNPTP 451


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = -3

Query: 285 SVQSGGNSDSWTSISRAGQTASLQWF*KRAP 193
           S +   N D WT  S +G     + F    P
Sbjct: 36  SFELSKNGDEWTFTSSSGDNTYTKTFKMNVP 66


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = -3

Query: 285 SVQSGGNSDSWTSISRAGQTASLQWF*KRAP 193
           S +   N D WT  S +G     + F    P
Sbjct: 38  SFELSKNGDEWTFTSSSGDNTYTKTFKMNVP 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,397
Number of Sequences: 438
Number of extensions: 1728
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)