Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1848
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    27   2.0  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    27   3.5  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   4.7  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   6.2  

>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 32  KGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKTFDKVWHNGLI 211
           KG+  D+ F F T  S +   HR+   +L   +  K +  G  + D  K   K W +G  
Sbjct: 289 KGLSHDDVFLFPTGMSAIYNTHRILRLVLD--DSRKSVCFGFCYVDTLKILQK-WGSGCY 345

Query: 212 F 214
           F
Sbjct: 346 F 346


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 466 VPNREEASERSPSPRTVVPKMAHRHQPSEKYCGALSEGKLHTDF 597
           +P REE S + P  +  V      + PS+K  G +S  K++  F
Sbjct: 105 LPEREEHSSQLPPAQNQVLPFQSLNAPSKKLRGRISLSKIYQFF 148


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -2

Query: 298 DSISKRAVRQEVPYDEHETIRHTHVE*FENQTVVPDFVERFCDVEEESS 152
           +S+   +  + VP  +HE I     +  E+ T +P  ++R C++ +ESS
Sbjct: 275 NSLDNESCVRVVPSFDHEEIGSVSAQGAES-TFLPAVLQRICELGKESS 322


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +1

Query: 133 TKTVIHGSSLLRRRKNVRQSLAQ 201
           T T+++GS ++  R+N+R+ + Q
Sbjct: 234 TGTIVYGSCMISVRRNIREEVVQ 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,952
Number of Sequences: 5004
Number of extensions: 67789
Number of successful extensions: 202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)