Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1848
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275...    29   3.7  
06_03_0088 + 16469006-16469189,16469664-16469797                       29   4.9  
01_07_0206 + 41990251-41992032,41992131-41992361                       28   6.4  
01_01_0693 + 5355081-5355106,5355969-5356056,5356079-5356141,535...    28   6.4  
11_03_0049 - 9318578-9319312                                           28   8.5  
03_05_0930 + 28908216-28908587                                         28   8.5  
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111...    28   8.5  
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701...    28   8.5  

>07_03_1691 -
           28726307-28726323,28726588-28726953,28727483-28727567,
           28728255-28728387,28729793-28730328
          Length = 378

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -2

Query: 673 DLPGPGYGLTKESNRGCEIPP-PNTGGNPCGASP 575
           D P PG       N  C +PP P+ GG   GA P
Sbjct: 9   DQPSPGRSPNPNLNLPCPLPPIPSCGGGGGGAGP 42


>06_03_0088 + 16469006-16469189,16469664-16469797
          Length = 105

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 697 IQGNAQVLDLPGPGYGLTKESNRGCEIPPPNTGGNP 590
           ++ NA +L  P  G  +T +++  C   PP  GGNP
Sbjct: 39  LEDNAIILVHPSRGQAVTSDTS--CGTKPPKLGGNP 72


>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 449 YSSRNKSLIAKKLQSAALALGQWFRKWR 532
           Y + +K+ ++K+ + + L LGQW   WR
Sbjct: 272 YVNMDKTWLSKQAEMSTLQLGQWKPSWR 299


>01_01_0693 +
           5355081-5355106,5355969-5356056,5356079-5356141,
           5356607-5356705
          Length = 91

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +2

Query: 65  RTNHSCVQQVHRLTEHILVGLN--RPKPLYTGALFFDVAKTFDKVWHNGLIFKLFN 226
           RTN  CV++   +   +LVG N    K +  G L   VA   D  W  G I    N
Sbjct: 21  RTNGKCVKETEAIRSELLVGENGINDKQIKKGLL---VASRVDGEWSRGTIGDALN 73


>11_03_0049 - 9318578-9319312
          Length = 244

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +2

Query: 389 DIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWF 520
           D+P +PP ++A    D   Y   R+K ++  +    +   G W+
Sbjct: 148 DLPPAPPPYVAALLRDKAPYPMMRSKLVLRSEAMDGSTFGGYWY 191


>03_05_0930 + 28908216-28908587
          Length = 123

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 631 RGCEIPPPNTGGNPCGASPLKE 566
           RG + PP +T GNPC  S L +
Sbjct: 25  RGQQSPPSSTRGNPCPTSALAD 46


>03_01_0141 +
           1116833-1117082,1117658-1118574,1119417-1119579,
           1119668-1120497,1120562-1120570
          Length = 722

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -3

Query: 324 GRGEERVPSTRYRKER-FDKKSRM-MSTRLSGTPMLNSLKIKPLCQTLSNVFATSKKRAP 151
           G  EE+  ++  +K   FD  + + M T  SG   +NS+ ++P+ + + +        AP
Sbjct: 537 GSDEEQQETSNNKKTNGFDNTAAVSMDTLKSGDDSMNSVVVEPIKERVESSKTDVDTAAP 596

Query: 150 VYNGFGRLS 124
            Y+   RLS
Sbjct: 597 FYSFVKRLS 605


>01_06_0734 +
           31569017-31569358,31569832-31569906,31570009-31570159,
           31570716-31570784,31570864-31571036,31571474-31571611,
           31571747-31571872,31571951-31572049,31573175-31573298,
           31573465-31573528,31573798-31573852,31573951-31574075,
           31574228-31574301,31574436-31574485,31574722-31574808,
           31574897-31574947,31575025-31575108,31575400-31575498
          Length = 661

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/50 (42%), Positives = 29/50 (58%)
 Frame = +1

Query: 259 TGLLVEPLFSISSRGNPLLPTTSHSWSPARLCPLTPPI*LIR*RYSPVAA 408
           TG+L+  L S +SR +P+ PT++   SPA   P   P  L+R  YS  AA
Sbjct: 3   TGMLLRGLRSAASRTSPVFPTSAS--SPA---PYVSP--LLRRLYSAAAA 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,777,265
Number of Sequences: 37544
Number of extensions: 514005
Number of successful extensions: 1608
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1608
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)