Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1848
(716 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 80 2e-15
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 64 1e-10
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 47 2e-05
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 42 3e-04
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 42 3e-04
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical ... 36 0.029
S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein. 29 2.5
S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein. 29 2.5
AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated... 29 2.5
AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated... 29 2.5
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 29 2.5
AF016688-9|AAN65322.1| 816|Caenorhabditis elegans Hypothetical ... 29 3.3
AF016688-8|AAB66079.2| 848|Caenorhabditis elegans Hypothetical ... 29 3.3
Z29561-3|CAD54153.1| 846|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical pr... 29 4.4
U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein. 29 4.4
U70845-5|AAB09103.1| 219|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81517-3|CAB04210.1| 802|Caenorhabditis elegans Hypothetical pr... 28 7.7
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 79.8 bits (188), Expect = 2e-15
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 2/138 (1%)
Frame = +2
Query: 158 LFFDVAKTFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAG 337
++ D +K FD++ H+ L+ KL ++ +L++ + +FLSNRSFR R+ T SS + T G
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76
Query: 338 VPQGXXXXXXXXXXXXNDIPRSPPTHLAL--FADDTTVYYSSRNKSLIAKKLQSAALALG 511
VPQG NDI P +A FADDT + Y+S K+ LQSA A+
Sbjct: 77 VPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKL-YASTPKTESENNLQSALDAVV 135
Query: 512 QWFRKWRIDINPAKSTAV 565
W + ++ +N +K+ V
Sbjct: 136 DWTKGSKLTLNQSKTVHV 153
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 64.1 bits (149), Expect = 1e-10
Identities = 58/233 (24%), Positives = 91/233 (39%), Gaps = 2/233 (0%)
Frame = +2
Query: 5 KRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALF-FDVAKT 181
KR+++ + S Q GF+ HS V ++T I+ GLN P + D+
Sbjct: 424 KRIKNSIESPA----HQHGFKPEHSTTTAVIQVTNDIIGGLNMKNPPERAIMACLDLRAA 479
Query: 182 FDKVWHNGLIFKLFN-MGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXX 358
FDKV L L G+ + L + ++L R R + S L GVPQG
Sbjct: 480 FDKVPTKKLCNDLMEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVI 539
Query: 359 XXXXXXXXXNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRID 538
D+P T L +ADD ++ + A+K+Q + ++ ++ +
Sbjct: 540 SPNLFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMS 599
Query: 539 INPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARKVKYLGVTLD 697
I+ KST +F P I IP K LG+TL+
Sbjct: 600 ISAEKSTVTVFS--------CDPKEHKTKPDIYWMDDPIPVINAPKLLGITLN 644
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Frame = +2
Query: 176 KTFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEG-TRSSPRPLTAGVPQGX 352
K FD+V H+ L+ KL + G+ DFLS+R+F +V + P+++GVP+G
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61
Query: 353 XXXXXXXXXXXNDIPRSPPTHL--ALFADDTTVYYSS 457
N + S P + + FADD VY S
Sbjct: 62 VSGPFLFLIFINSLLLSVPPSISCSAFADDLKVYSHS 98
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 42.3 bits (95), Expect = 3e-04
Identities = 29/100 (29%), Positives = 44/100 (44%)
Frame = +2
Query: 50 EQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKTFDKVWHNGLIFKLFNM 229
EQ GFR + S + +H L + VG PL +F D K FD V H + L
Sbjct: 655 EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTL--VFIDFKKAFDSVEHQAIWKSLDEQ 712
Query: 230 GVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQG 349
G + + ++++ N + + R P+T GV QG
Sbjct: 713 GADGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKGVRQG 751
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 42.3 bits (95), Expect = 3e-04
Identities = 29/100 (29%), Positives = 44/100 (44%)
Frame = +2
Query: 50 EQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKTFDKVWHNGLIFKLFNM 229
EQ GFR + S + +H L + VG PL +F D K FD V H + L
Sbjct: 394 EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTL--VFIDFKKAFDSVEHQAIWKSLDEQ 451
Query: 230 GVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQG 349
G + + ++++ N + + R P+T GV QG
Sbjct: 452 GADGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKGVRQG 490
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 41.9 bits (94), Expect = 4e-04
Identities = 29/100 (29%), Positives = 44/100 (44%)
Frame = +2
Query: 50 EQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKTFDKVWHNGLIFKLFNM 229
EQ GFR + S + +H L + VG PL +F D K FD V H + L
Sbjct: 484 EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTL--VFIDFKKAFDTVEHQAIWKSLDEQ 541
Query: 230 GVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQG 349
G + + ++++ N + + R P+T GV QG
Sbjct: 542 GADGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKGVRQG 580
>AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical
protein Y82E9BR.8 protein.
Length = 390
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = -3
Query: 393 ISLTNKLNRRGERTEPCGTPAVRGRGEER 307
ISLTN GERT+PCGTP G E+
Sbjct: 50 ISLTNMPKSTGERTDPCGTPHTAFLGSEK 78
>S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein.
Length = 919
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 631 RGCEIPPPNTGGNPC 587
R C +PPP GG PC
Sbjct: 296 RACTVPPPMNGGQPC 310
>S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein.
Length = 947
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 631 RGCEIPPPNTGGNPC 587
R C +PPP GG PC
Sbjct: 324 RACTVPPPMNGGQPC 338
>AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated
protein 5, isoform b protein.
Length = 567
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 631 RGCEIPPPNTGGNPC 587
R C +PPP GG PC
Sbjct: 296 RACTVPPPMNGGQPC 310
>AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated
protein 5, isoform a protein.
Length = 919
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 631 RGCEIPPPNTGGNPC 587
R C +PPP GG PC
Sbjct: 296 RACTVPPPMNGGQPC 310
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +2
Query: 158 LFFDVAKTFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAG 337
+F D K FD V H + L G ++ + ++++ N + + R P+T G
Sbjct: 40 VFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECYKNCTTNF-TPFLRPITVPVTKG 98
Query: 338 VPQG 349
V QG
Sbjct: 99 VRQG 102
>AF016688-9|AAN65322.1| 816|Caenorhabditis elegans Hypothetical
protein F18A12.8b protein.
Length = 816
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 386 NDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPA 550
ND+P+ +L L D+ YY KS++ + + L + F K DI+PA
Sbjct: 585 NDLPKLDKQYLGLSISDSDTYYYIMKKSVVWMQSREFQ-KLTKPFDKHEFDISPA 638
>AF016688-8|AAB66079.2| 848|Caenorhabditis elegans Hypothetical
protein F18A12.8a protein.
Length = 848
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 386 NDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPA 550
ND+P+ +L L D+ YY KS++ + + L + F K DI+PA
Sbjct: 585 NDLPKLDKQYLGLSISDSDTYYYIMKKSVVWMQSREFQ-KLTKPFDKHEFDISPA 638
>Z29561-3|CAD54153.1| 846|Caenorhabditis elegans Hypothetical
protein R10E12.1c protein.
Length = 846
Score = 28.7 bits (61), Expect = 4.4
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = -3
Query: 423 KAKWVGGDRGIS-LTNKLNRRGERTEPCGTPAVRGRGEERVPSTRYRKERFDKKSRMMST 247
K K GG I L ++L +R E T R EE+ RK+ K +RM S
Sbjct: 430 KLKQNGGSSEIMRLFSELPTLYQRNEDILTETSRILNEEKESDDTMRKQLGTKWTRMSSE 489
Query: 246 RLSGTPMLNSLKIKPLCQTLSNVFATSKKR 157
+L+G + K + + T SN K++
Sbjct: 490 QLTGPLVTEIGKYRGILHTASNADKMVKEK 519
>Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical
protein R10E12.1b protein.
Length = 882
Score = 28.7 bits (61), Expect = 4.4
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = -3
Query: 423 KAKWVGGDRGIS-LTNKLNRRGERTEPCGTPAVRGRGEERVPSTRYRKERFDKKSRMMST 247
K K GG I L ++L +R E T R EE+ RK+ K +RM S
Sbjct: 430 KLKQNGGSSEIMRLFSELPTLYQRNEDILTETSRILNEEKESDDTMRKQLGTKWTRMSSE 489
Query: 246 RLSGTPMLNSLKIKPLCQTLSNVFATSKKR 157
+L+G + K + + T SN K++
Sbjct: 490 QLTGPLVTEIGKYRGILHTASNADKMVKEK 519
>Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical
protein R10E12.1a protein.
Length = 861
Score = 28.7 bits (61), Expect = 4.4
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = -3
Query: 423 KAKWVGGDRGIS-LTNKLNRRGERTEPCGTPAVRGRGEERVPSTRYRKERFDKKSRMMST 247
K K GG I L ++L +R E T R EE+ RK+ K +RM S
Sbjct: 430 KLKQNGGSSEIMRLFSELPTLYQRNEDILTETSRILNEEKESDDTMRKQLGTKWTRMSSE 489
Query: 246 RLSGTPMLNSLKIKPLCQTLSNVFATSKKR 157
+L+G + K + + T SN K++
Sbjct: 490 QLTGPLVTEIGKYRGILHTASNADKMVKEK 519
>U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein.
Length = 861
Score = 28.7 bits (61), Expect = 4.4
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = -3
Query: 423 KAKWVGGDRGIS-LTNKLNRRGERTEPCGTPAVRGRGEERVPSTRYRKERFDKKSRMMST 247
K K GG I L ++L +R E T R EE+ RK+ K +RM S
Sbjct: 430 KLKQNGGSSEIMRLFSELPTLYQRNEDILTETSRILNEEKESDDTMRKQLGTKWTRMSSE 489
Query: 246 RLSGTPMLNSLKIKPLCQTLSNVFATSKKR 157
+L+G + K + + T SN K++
Sbjct: 490 QLTGPLVTEIGKYRGILHTASNADKMVKEK 519
>U70845-5|AAB09103.1| 219|Caenorhabditis elegans Hypothetical
protein F22H10.6 protein.
Length = 219
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 112 HSCGA*STKTVIHGSSLLRRRKNVRQSLAQRFDFQTIQHGC 234
HS S+ H SS +RR +V + AQRF Q Q GC
Sbjct: 27 HSQNFKSSSICGHFSSTIRRYHHVSEREAQRFQQQLRQPGC 67
>Z81517-3|CAB04210.1| 802|Caenorhabditis elegans Hypothetical
protein F28B1.3 protein.
Length = 802
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 227 MGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLT 331
+ +PD ++I R+ R V GT+SSP PLT
Sbjct: 405 LDLPDHYLMIFREEAHPIFMRRFVNGTQSSPIPLT 439
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,522,624
Number of Sequences: 27780
Number of extensions: 400162
Number of successful extensions: 1158
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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