Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1844
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.9  
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   2.9  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    27   2.9  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    27   3.8  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   6.6  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   6.6  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   8.8  

>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 587 CNVCKYSNFQRRQKC 631
           C +C +SNFQRR  C
Sbjct: 349 CPMCGFSNFQRRTSC 363


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 459 QVRDESVLHVLDSIVDKGHYHCESVLGHLWID*AHQRTT 575
           +++  S+L V D       YHCES +    ID AH R T
Sbjct: 204 ELKSSSILFVYDYSSLNPTYHCESNVVLKLIDLAHSRWT 242


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 165 TLLFNLCVCPCVL 127
           T LFN+C CPCV+
Sbjct: 467 TSLFNICDCPCVV 479


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 216 CGAKTSTQFFFPPTRRHITILHYADRWRGLGQGNFSRFPNIS 341
           C + +S +F F   R H+ + +       + +  FS+ PN+S
Sbjct: 574 CSSLSSPRFLFRNPRNHLLLEYLLQAISSIVENKFSQNPNLS 615


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 597 HTLQQRQKWYVDALNLSINDLVLIHNDNAPCQQWSLGRVEQIH 469
           H    ++  +V     +I D++L+H  ++  ++W L  +EQ H
Sbjct: 316 HLFLMQRPSFVSLNYTTIVDIILLHQSHSTSKEW-LSSLEQYH 357


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -1

Query: 561 ALNLSINDLVLIHNDNAPCQQWSLGRVEQIHPGLDGRVRVVTV 433
           +L   I+  ++  +   PC  WS   ++Q+   +D    +VTV
Sbjct: 192 SLGDKISSTIVAQSARVPCMSWSGNELDQVR--IDEETNIVTV 232


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 705 APSYDIADVSINYLTRWQCIKQSTLHFWRRWK 610
           AP+     ++ ++L   QC+KQ   + W+++K
Sbjct: 202 APNLPAMALAYDFLLMQQCVKQLPSNCWQKYK 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,248,178
Number of Sequences: 5004
Number of extensions: 68874
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)