Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1844
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402...    31   0.98 
06_02_0365 + 15190841-15190988,15191296-15191754,15192692-151927...    31   1.3  
11_04_0201 - 14768341-14768524,14768720-14768838                       28   9.2  

>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
            42640431-42640607,42640853-42641617,42641697-42641791,
            42641889-42641951,42642047-42642135,42642229-42642324,
            42642457-42643104,42643596-42643628,42643838-42643912,
            42644442-42644603,42644604-42644674,42644758-42644815,
            42645196-42645394,42645487-42645552,42645699-42646183
          Length = 1310

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 252  AEKRTASTFLHRT-RNIKKVYLIQKYCFSQTLLFNLCVCPCVLNSSI*NSAPGTED 88
            A K+ A  F  RT    +K    +K CF +  L+N+   P   N +I    PG+ D
Sbjct: 1080 AAKQVALAFAKRTLARCQKFEETEKSCFREPFLWNVLSAPLPKNDAIDGGLPGSAD 1135


>06_02_0365 +
           15190841-15190988,15191296-15191754,15192692-15192782,
           15192902-15193003,15193126-15193228,15193548-15193685,
           15193912-15193974,15195042-15195124,15196312-15196411,
           15196640-15196717,15196834-15196941,15197987-15198067,
           15200179-15200220,15200221-15200283,15200426-15200482
          Length = 571

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -1

Query: 558 LNLSINDLVLIHNDNAPCQQWSLGRVEQI 472
           +NLSI ++ L H +N P Q+WS+ ++ ++
Sbjct: 323 VNLSIPEMWLWHLENVPEQEWSMNKIMRV 351


>11_04_0201 - 14768341-14768524,14768720-14768838
          Length = 100

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/74 (24%), Positives = 30/74 (40%)
 Frame = -1

Query: 648 IKQSTLHFWRRWKLEYLHTLQQRQKWYVDALNLSINDLVLIHNDNAPCQQWSLGRVEQIH 469
           +++ T H+  R  +   HTL    +       +++   V+ HND      WS   V   H
Sbjct: 1   MEECTPHYLARGGVHVSHTLSAPTRADCTVERMTLVTTVMKHNDTVEESWWS--TVASNH 58

Query: 468 PGLDGRVRVVTVRT 427
              +GR     +RT
Sbjct: 59  QNTEGRRSAAAMRT 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,986,682
Number of Sequences: 37544
Number of extensions: 444864
Number of successful extensions: 900
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)