Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1844
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    43   2e-04
Z68753-7|CAA92987.1|  240|Caenorhabditis elegans Hypothetical pr...    31   0.88 
U64599-2|ABB88205.1|  420|Caenorhabditis elegans Unidentified vi...    29   2.7  
U64599-1|AAB04560.3|  426|Caenorhabditis elegans Unidentified vi...    29   2.7  
Z98877-9|CAB63405.1|  348|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
            protein ZC132.5 protein.
          Length = 1277

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
 Frame = -1

Query: 624  WRRWKLEYLHTLQQRQKWYVD---ALNLS--INDLVLIHNDNAPCQQWSLGRVEQIHPGL 460
            W+ W   YL  L++  K  +D    +N S  +  +VLI + N P   W +G++ +  P  
Sbjct: 1052 WKIWNKTYLSELRETHKLRMDNKREINDSPFVGQVVLICDPNLPRNNWKMGKITETKPST 1111

Query: 459  DGRVRVVTVRTQNSK-LKRLVTKLSPL 382
            DG +R   + T   + ++R +  ++PL
Sbjct: 1112 DGILREAHLLTATGRTIRRPINLITPL 1138


>Z68753-7|CAA92987.1|  240|Caenorhabditis elegans Hypothetical
           protein ZC518.4 protein.
          Length = 240

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 210 NIKKVYLIQKYCFSQTLLFNLCVCPCVLNSSI*NSAPGTEDHK*YRASICEY 55
           N K +YLI    F QTL+ ++ +C  ++  SI     GTED +     +C++
Sbjct: 2   NSKLLYLISLIQFFQTLITSITICAILIYCSI----NGTEDEEAANIEMCQF 49


>U64599-2|ABB88205.1|  420|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 6, isoform b
           protein.
          Length = 420

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 246 KRTASTFLHRTRNIKKVYLIQKYCFSQTLLFNL 148
           KR+ S++   TR++++V L    C+S   LFNL
Sbjct: 224 KRSRSSYQRVTRSVQRVVLFHLLCWSPFWLFNL 256


>U64599-1|AAB04560.3|  426|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 6, isoform a
           protein.
          Length = 426

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 246 KRTASTFLHRTRNIKKVYLIQKYCFSQTLLFNL 148
           KR+ S++   TR++++V L    C+S   LFNL
Sbjct: 224 KRSRSSYQRVTRSVQRVVLFHLLCWSPFWLFNL 256


>Z98877-9|CAB63405.1|  348|Caenorhabditis elegans Hypothetical
           protein Y69H2.8 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 26/76 (34%), Positives = 35/76 (46%)
 Frame = -2

Query: 326 PTKIPLS*STPSIGIMKNCNVPPSGRKKELRRRFCTARATLKKCI*FKNTVFPKLCYSTC 147
           P+ +P   ST S  +   C  P SGR      R+  A A L   + F+ +V  K+ Y+  
Sbjct: 9   PSDLP---STSSNLLCTVCGAPASGR------RYGAAAACLACIVFFRRSVLRKIHYTCQ 59

Query: 146 ACVRVS*TPASRTVPR 99
           A  R   T ASR V R
Sbjct: 60  ALGRCEITVASRCVCR 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,173,204
Number of Sequences: 27780
Number of extensions: 396947
Number of successful extensions: 864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)