Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1843
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    36   0.004
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    35   0.010
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    32   0.090
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    29   0.48 
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    29   0.64 
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    28   1.1  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    28   1.5  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   2.6  
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    27   3.4  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.4  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    26   4.5  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   4.5  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    25   7.9  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   7.9  

>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 438 FRLYDVERRGAVPASHLRDALHSAGYTVN-AHVLNVLAHRYGTTDGYIQFDDFI 596
           F+L+D ++  A+    LR A+ + G+    + VL +L     T  GY+Q +DF+
Sbjct: 43  FKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFV 96


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 429 RAVFRLYDVERRGAVPASHLRDALHSAGYTVNAHVLNVLAHRYGTTDGYIQFDDFIMCAV 608
           +  F LYD+++ G +P SH+   L S G  V    L  L++  G      +F  F+   +
Sbjct: 12  KEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNELGDAIDEKKFMSFVSNKL 71

Query: 609 R 611
           R
Sbjct: 72  R 72


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
 Frame = +3

Query: 60  STFDPDEEGEFLLRVFSEKDNNMAENDEDIGMGDVDDRVKELAPDPEPADPVREFFTRLA 239
           S FD D++G            ++ ++       ++ D + E+  D        EF T +A
Sbjct: 19  SLFDRDQDGNITSNELGVVMRSLGQSPT---AAELQDMINEVDADGNGTIDFTEFLTMMA 75

Query: 240 ----GSDGEVDWQELKEILD-----YAMREELQ------GQGFSKDVCRSMIAMLDKDGS 374
                +D E + +E  ++ D     Y   EEL       G+  S++    MI   D DG 
Sbjct: 76  RKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGD 135

Query: 375 GGLGFEEF 398
           G + +EEF
Sbjct: 136 GVINYEEF 143


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 17/80 (21%), Positives = 40/80 (50%)
 Frame = +3

Query: 447 YDVERRGAVPASHLRDALHSAGYTVNAHVLNVLAHRYGTTDGYIQFDDFIMCAVRLKTMI 626
           Y + ++ A+    +  A +  GY V+  ++ V+  ++      IQ   F++C +    + 
Sbjct: 395 YHILQKNAIGNLIIAVAGYIPGYWVSVVLIEVMGRKW------IQIQGFLICCLLFGVLA 448

Query: 627 DTFNSRSSGGDYATFSLEEW 686
            T+ + S+GG +A  +L ++
Sbjct: 449 GTWETISTGGRFACVALAQF 468


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
 Frame = +3

Query: 165 DDRVKELAPDPEPADPVREFFTRL-AGSDGEVDWQELKEILDYAMREELQGQGFSKDVCR 341
           +D +   +   E  + +R+ F ++ A   G +D  E   I   A          S  +  
Sbjct: 10  EDLISNSSFSNEEIERIRKRFIKIDANQSGSIDRNEFLSIPSVA----------SNPLAS 59

Query: 342 SMIAMLDKDGSGGLGFEEF-KSLWI------DLRNWRAVFRLYDVERRGAVPASHL 488
            + +++D+DG G + F+EF  SL +           +  F++YD++R G +    L
Sbjct: 60  RLFSVVDEDGGGDVDFQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGEL 115



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 246 DGEVDWQELKEILDYAMREELQGQGFSKDVCRSMIAMLDKDGSGGLGFEEFKSL 407
           DG +   EL  +L   +   L+     + V ++++ + DKD  G + FEEFK +
Sbjct: 107 DGYISNGELYLVLKMMVGTNLREDQLQQIVDKTIMEV-DKDRDGKISFEEFKDI 159


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 339 RSMIAMLDKDGSGGLGFEEFKSLWIDL 419
           +   A+LDKDG G +G E+ K++   L
Sbjct: 51  KEAFALLDKDGDGNIGREDVKTMLTSL 77


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +3

Query: 75  DEEGEFLLRVFSEKDNNMAENDEDIGMGDVDDRVKELAPDPEPADPVREFFTRLAGSDGE 254
           DE+ ++++  F E +      DE+     +  R +E   + E A    + F     SDGE
Sbjct: 361 DEQRDYVMETFHEDEELEDSEDEEFARQQLLSRKEEEEEEDEEASDFEDSFADF--SDGE 418

Query: 255 VD 260
            D
Sbjct: 419 AD 420


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 373 PEDLASKSSSPCGSTCATGGPCSACTTWSGGGRSPPAT 486
           P  ++++++ P  ST AT GP     +   GG   PAT
Sbjct: 547 PPQVSAQTTIPAASTSATSGPVVGKQSAGYGGIYSPAT 584


>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 272 EFLPVDLPVGAGEPREELTD 213
           E +PV++PVG G+P + +T+
Sbjct: 200 EIVPVEVPVGRGKPNKLVTE 219


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 210 PVREFFTRLAGSDGEVDWQELKEILDYAMREEL 308
           P R F T L    G   W++L EIL Y  R  L
Sbjct: 896 PQRMFITDLLNVIGRKIWKKLAEILGYTSRRFL 928


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 198 EPADPVREFFTRLAGSDGEVDWQELKEIL 284
           E +DP+   F    GS GE DWQE ++ L
Sbjct: 74  ELSDPLPAEFYFKKGSVGEKDWQERQKTL 102


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 57  PSTFDPDEEGEFLLRVFSEKDNNMAEND 140
           PST++PD+ GE  ++V  + D+     D
Sbjct: 599 PSTYEPDKRGEGWIKVKQDYDDEFESLD 626


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +1

Query: 373 PEDLASKSSSPCGSTCATGGPCSACTTWS 459
           PE L    SSPCGS  A G        WS
Sbjct: 76  PEILICVQSSPCGSWLAAGTEKGNLYIWS 104


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 387 SQVLRSRPCQASRSCYGTRPWRNPDL 310
           S + RSR C +   CY  R  RN  L
Sbjct: 405 SYICRSRSCPSKYQCYSCRCARNSSL 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,490
Number of Sequences: 5004
Number of extensions: 42919
Number of successful extensions: 160
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)