Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1842
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    29   0.79 
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    27   4.2  
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M...    26   7.3  
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    25   9.7  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   9.7  
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz...    25   9.7  

>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 282 RTPSVYLKKKNEQLHFLKHHVFKSARTDVRVTRGTA 175
           R  ++YLK     L+ LKH V KS + DVR+ R  A
Sbjct: 232 RLQTIYLKTNKRGLYTLKHVVDKS-KLDVRIFRSEA 266


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 603 DDEGARLPN--IFRCDSSLSEICHTACGHAGALASRCP*SEWAGLHSRNGST 752
           DD  + LP+  + RC++S  E+ HT    A +     P   + G H+  G++
Sbjct: 155 DDIESVLPSTIVHRCNTSQQEVSHTHTQVADSATESSPLLSYTGNHNGAGTS 206


>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 21/79 (26%), Positives = 34/79 (43%)
 Frame = -1

Query: 674 RCVTNLRQGAVTPEDVGQPGSLVIQSQVRGKEFDQKVSLLDSRLDLQKLPSAALASNEKA 495
           RC  N     +  ED  +  +LV +S+   +  D  V L+D  +D + L    +  +   
Sbjct: 80  RCAQNEDLVTLKAEDTPEVLNLVFESEKNDRISDYDVKLMD--IDQEHLGIPDIEYDATI 137

Query: 494 RFPEG*LFRRSRILVTYSD 438
             P     R +R L+T SD
Sbjct: 138 TMPAAEFQRITRDLLTLSD 156


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 469 RKSYPSGNRAFSLLAKA 519
           RK YP  +RAFSLL ++
Sbjct: 54  RKDYPRASRAFSLLLRS 70


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 723 PTRFMDIEKPKLLRDHTLCDKSQTGSCHTGR 631
           P ++ D    + LRD+    K+   +CH GR
Sbjct: 900 PAKYPDCSGSRTLRDNISDVKAMLSACHRGR 930


>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
           L12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 206

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 811 TILETLGLISQGG*RIYVVDVEPLRECSPAHSLYGHREAKAP 686
           ++LET  L+ Q   ++ + ++ P+   +PA +     E KAP
Sbjct: 88  SLLETSELVKQLKEKLNIAEIAPMAAVAPAVASAAPSEEKAP 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,588,628
Number of Sequences: 5004
Number of extensions: 78868
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)